Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NUW85_RS04710 Genome accession   NZ_CP102603
Coordinates   1091509..1091973 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1086509..1096973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS04685 (NUW85_04685) - 1087020..1087568 (-) 549 Protein_933 hypothetical protein -
  NUW85_RS04690 (NUW85_04690) fadH 1087678..1088442 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  NUW85_RS04695 (NUW85_04695) - 1088586..1089449 (+) 864 WP_139885250.1 metallophosphoesterase -
  NUW85_RS04700 (NUW85_04700) - 1089524..1090018 (+) 495 WP_088037173.1 L,D-transpeptidase family protein -
  NUW85_RS04705 (NUW85_04705) - 1090094..1091386 (+) 1293 WP_069473381.1 MFS transporter -
  NUW85_RS04710 (NUW85_04710) kre 1091509..1091973 (+) 465 WP_003154622.1 YkyB family protein Regulator
  NUW85_RS04715 (NUW85_04715) cheV 1092016..1092927 (-) 912 WP_014304917.1 chemotaxis protein CheV -
  NUW85_RS04720 (NUW85_04720) - 1093116..1093277 (+) 162 WP_007409608.1 hypothetical protein -
  NUW85_RS04725 (NUW85_04725) - 1093478..1094647 (+) 1170 WP_007611083.1 aminotransferase A -
  NUW85_RS04730 (NUW85_04730) - 1094673..1096493 (-) 1821 WP_015417363.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=718022 NUW85_RS04710 WP_003154622.1 1091509..1091973(+) (kre) [Bacillus amyloliquefaciens strain MBLB0692]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=718022 NUW85_RS04710 WP_003154622.1 1091509..1091973(+) (kre) [Bacillus amyloliquefaciens strain MBLB0692]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929