Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NUW85_RS04610 Genome accession   NZ_CP102603
Coordinates   1075513..1076109 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1070513..1081109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS04585 (NUW85_04585) mobB 1070889..1071410 (-) 522 WP_139885253.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  NUW85_RS04590 (NUW85_04590) glp 1071371..1072663 (-) 1293 WP_015388302.1 gephyrin-like molybdotransferase Glp -
  NUW85_RS04595 (NUW85_04595) - 1072681..1073700 (-) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  NUW85_RS04600 (NUW85_04600) - 1073752..1074354 (-) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  NUW85_RS04605 (NUW85_04605) - 1074500..1075492 (+) 993 WP_003154589.1 hypothetical protein -
  NUW85_RS04610 (NUW85_04610) rok 1075513..1076109 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  NUW85_RS04615 (NUW85_04615) - 1076561..1077019 (-) 459 WP_139885252.1 TlpA disulfide reductase family protein -
  NUW85_RS04620 (NUW85_04620) - 1077307..1078113 (+) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  NUW85_RS04625 (NUW85_04625) - 1078147..1078392 (-) 246 WP_003154596.1 YkuS family protein -
  NUW85_RS04630 (NUW85_04630) - 1078453..1079577 (-) 1125 WP_139885251.1 N-acetyldiaminopimelate deacetylase -
  NUW85_RS04635 (NUW85_04635) dapD 1079648..1080358 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NUW85_RS04640 (NUW85_04640) - 1080440..1080895 (-) 456 WP_048367197.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=718021 NUW85_RS04610 WP_003154591.1 1075513..1076109(-) (rok) [Bacillus amyloliquefaciens strain MBLB0692]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=718021 NUW85_RS04610 WP_003154591.1 1075513..1076109(-) (rok) [Bacillus amyloliquefaciens strain MBLB0692]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCTGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843