Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NQZ71_RS02405 Genome accession   NZ_CP102589
Coordinates   465083..465595 (+) Length   170 a.a.
NCBI ID   WP_144454973.1    Uniprot ID   A0A553SHN3
Organism   Niallia taxi strain NBC_Nia     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 460083..470595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ71_RS02380 (NQZ71_02380) - 460856..461716 (+) 861 WP_144454969.1 mechanosensitive ion channel family protein -
  NQZ71_RS02385 (NQZ71_02385) - 461731..461928 (+) 198 WP_144454970.1 DUF951 domain-containing protein -
  NQZ71_RS02390 (NQZ71_02390) ychF 462077..463177 (+) 1101 WP_144454971.1 redox-regulated ATPase YchF -
  NQZ71_RS02395 (NQZ71_02395) - 463439..464590 (+) 1152 WP_317011238.1 glycosyltransferase family 1 protein -
  NQZ71_RS02400 (NQZ71_02400) rpsF 464737..465027 (+) 291 WP_127738813.1 30S ribosomal protein S6 -
  NQZ71_RS02405 (NQZ71_02405) ssbA 465083..465595 (+) 513 WP_144454973.1 single-stranded DNA-binding protein Machinery gene
  NQZ71_RS02410 (NQZ71_02410) rpsR 465638..465874 (+) 237 WP_182102925.1 30S ribosomal protein S18 -
  NQZ71_RS02415 (NQZ71_02415) - 466176..468149 (+) 1974 WP_144454974.1 DHH family phosphoesterase -
  NQZ71_RS02420 (NQZ71_02420) rplI 468146..468595 (+) 450 WP_144454975.1 50S ribosomal protein L9 -
  NQZ71_RS02425 (NQZ71_02425) dnaB 468734..470098 (+) 1365 WP_127738818.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19205.03 Da        Isoelectric Point: 4.8282

>NTDB_id=717914 NQZ71_RS02405 WP_144454973.1 465083..465595(+) (ssbA) [Niallia taxi strain NBC_Nia]
MMNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVIWRKPAENVANFLKKGSLAGVDGRLQTR
SYEGQDGKRVYVTEVQAESVQFLEPRNSNSGNRNDNMNYSAPREQDNPFGGSNNYQNQRPQNKNNDYTRMDEDPFANSGQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=717914 NQZ71_RS02405 WP_144454973.1 465083..465595(+) (ssbA) [Niallia taxi strain NBC_Nia]
ATGATGAACCGTGTTGTTCTTGTTGGCCGACTGACGAAGGATCCTGAACTGCGATACACACCGAGTGGAGCTGCTGTTGC
AACTTTCACACTTGCGGTCAATCGTACTTTTACGAACCAACAAGGTGAAAGAGAAGCAGACTTTATCAATTGTGTAATCT
GGAGAAAACCTGCAGAAAATGTAGCTAATTTCTTGAAGAAAGGAAGCTTAGCTGGCGTTGACGGCAGACTTCAAACACGC
AGTTATGAGGGACAAGATGGAAAGCGTGTCTATGTTACAGAAGTGCAAGCAGAAAGTGTTCAATTTCTTGAACCTAGAAA
CAGCAACTCTGGAAATAGAAATGACAACATGAATTATAGTGCACCAAGGGAACAAGATAATCCTTTCGGAGGCTCTAATA
ATTATCAGAATCAGCGACCTCAAAATAAAAACAATGATTATACAAGAATGGACGAGGATCCATTTGCTAATAGCGGTCAA
ATCGACATTTCAGATGATGACTTGCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A553SHN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.391

100

0.741
  ssb Latilactobacillus sakei subsp. sakei 23K

59.538

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Vibrio cholerae strain A1552

32.979

100

0.365