Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   MOP79_RS02140 Genome accession   NZ_CP102583
Coordinates   416628..417581 (-) Length   317 a.a.
NCBI ID   WP_000495911.1    Uniprot ID   Q8DQ27
Organism   Streptococcus pneumoniae strain D39Mega17545     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 411628..422581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP79_RS02115 - 412114..412209 (-) 96 Protein_422 IS630 family transposase -
  MOP79_RS02120 - 412624..412965 (+) 342 Protein_423 transposase -
  MOP79_RS02125 prsA 413084..414025 (-) 942 WP_000727935.1 peptidylprolyl isomerase PrsA -
  MOP79_RS02130 - 414092..414805 (-) 714 WP_000230399.1 O-methyltransferase -
  MOP79_RS02135 pepF 414807..416609 (-) 1803 WP_000244122.1 oligoendopeptidase F Regulator
  MOP79_RS02140 coiA 416628..417581 (-) 954 WP_000495911.1 competence protein CoiA Machinery gene
  MOP79_RS02145 tehB 417654..418514 (-) 861 WP_000413762.1 SAM-dependent methyltransferase TehB -
  MOP79_RS02150 smpB 418530..418997 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  MOP79_RS02155 rnr 418960..421314 (-) 2355 WP_000654897.1 ribonuclease R -
  MOP79_RS02160 secG 421416..421649 (-) 234 WP_000282517.1 preprotein translocase subunit SecG -
  MOP79_RS02165 rpmG 421689..421838 (-) 150 WP_001810029.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38143.79 Da        Isoelectric Point: 9.1135

>NTDB_id=717842 MOP79_RS02140 WP_000495911.1 416628..417581(-) (coiA) [Streptococcus pneumoniae strain D39Mega17545]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQLHLRQGPSVRTHFAHKSLKDCDFFFENESPEHLANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKGKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKKQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQHFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=717842 MOP79_RS02140 WP_000495911.1 416628..417581(-) (coiA) [Streptococcus pneumoniae strain D39Mega17545]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGCTCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCTTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACCTGGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGCTATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTTTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGGAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGCCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAAACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCAGCACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DQ27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

100

100

1
  coiA Streptococcus pneumoniae D39

100

100

1
  coiA Streptococcus pneumoniae R6

100

100

1
  coiA Streptococcus pneumoniae TIGR4

99.369

100

0.994
  coiA Streptococcus mitis NCTC 12261

89.274

100

0.893
  coiA Lactococcus lactis subsp. cremoris KW2

42.593

100

0.435