Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NR800_RS33015 Genome accession   NZ_CP102579
Coordinates   8277401..8277910 (+) Length   169 a.a.
NCBI ID   WP_223740692.1    Uniprot ID   -
Organism   Corallococcus interemptor strain YZPH-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8272401..8282910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR800_RS33005 (NR800_33095) - 8273160..8274776 (-) 1617 WP_375743231.1 ABC transporter substrate-binding protein -
  NR800_RS33010 (NR800_33100) dacB 8274911..8277148 (+) 2238 WP_375743232.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  NR800_RS33015 (NR800_33105) ssb 8277401..8277910 (+) 510 WP_223740692.1 single-stranded DNA-binding protein Machinery gene
  NR800_RS33020 (NR800_33110) - 8278033..8278716 (-) 684 WP_223762800.1 succinate dehydrogenase -
  NR800_RS33025 (NR800_33115) - 8278989..8279882 (+) 894 WP_223762801.1 Hsp33 family molecular chaperone HslO -
  NR800_RS33030 (NR800_33120) - 8280017..8280712 (+) 696 WP_223740689.1 phosphoribosyltransferase -
  NR800_RS33035 (NR800_33125) selB 8280740..8282668 (+) 1929 WP_223740688.1 selenocysteine-specific translation elongation factor -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18187.06 Da        Isoelectric Point: 5.3106

>NTDB_id=717778 NR800_RS33015 WP_223740692.1 8277401..8277910(+) (ssb) [Corallococcus interemptor strain YZPH-2]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWNDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCFVEG
RLQTREWMDKENKKNYTTEVVATSVTFLGGRDAGEGYSGGNGGGRRQQQGNGGYGQGRDDYGQPPPPMGMDDGGGMGGNP
GGTDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=717778 NR800_RS33015 WP_223740692.1 8277401..8277910(+) (ssb) [Corallococcus interemptor strain YZPH-2]
ATGGCTGGAGGCGTGAACAAGGTCATTCTCATCGGCAACCTCGGGGCGGACCCCGAAGTGCGCTTCACCCCGGGCGGTCA
GGCCGTGGCGAACTTCCGCATCGCGACGAGCGAGAGCTGGAACGACAAGAACGGCCAGAAGCAGGAGCGCACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTGTGCGGCGAGTACCTCAAGAAGGGACGGCAGTGCTTCGTCGAAGGC
CGTCTGCAGACGCGCGAGTGGATGGATAAGGAGAACAAGAAGAACTACACCACCGAGGTCGTCGCCACCTCCGTCACCTT
CCTCGGCGGCCGTGACGCCGGTGAGGGCTACAGCGGCGGCAATGGCGGTGGGCGCCGGCAGCAGCAGGGCAACGGCGGCT
ACGGGCAGGGGCGTGACGACTACGGCCAGCCGCCGCCTCCCATGGGCATGGACGACGGTGGGGGCATGGGCGGCAACCCC
GGCGGCACGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.555

100

0.497
  ssb Neisseria gonorrhoeae MS11

42.077

100

0.456
  ssb Glaesserella parasuis strain SC1401

42.458

100

0.45
  ssb Neisseria meningitidis MC58

48.227

83.432

0.402