Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NR798_RS07860 Genome accession   NZ_CP102578
Coordinates   1973587..1974108 (+) Length   173 a.a.
NCBI ID   WP_375770810.1    Uniprot ID   -
Organism   Archangium gephyra strain SDU49     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1968587..1979108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR798_RS07850 (NR798_07880) - 1970087..1970878 (+) 792 WP_375770808.1 SDR family oxidoreductase -
  NR798_RS07855 (NR798_07885) dacB 1971161..1973401 (+) 2241 WP_375770809.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  NR798_RS07860 (NR798_07890) ssb 1973587..1974108 (+) 522 WP_375770810.1 single-stranded DNA-binding protein Machinery gene
  NR798_RS07865 (NR798_07895) - 1974216..1974935 (-) 720 WP_375770811.1 succinate dehydrogenase -
  NR798_RS07870 (NR798_07900) - 1975182..1976081 (+) 900 WP_375770812.1 Hsp33 family molecular chaperone HslO -
  NR798_RS07875 (NR798_07905) - 1976181..1976855 (+) 675 WP_375770813.1 phosphoribosyltransferase -
  NR798_RS07880 (NR798_07910) selB 1976880..1978796 (+) 1917 WP_375770814.1 selenocysteine-specific translation elongation factor -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 17958.65 Da        Isoelectric Point: 5.2866

>NTDB_id=717759 NR798_RS07860 WP_375770810.1 1973587..1974108(+) (ssb) [Archangium gephyra strain SDU49]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSDTWTDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGRDGAGAGAGGGGGGARGGGYSQQRGGGQQQGGYDDYGPPPMGMDEGGGGG
GGGSGGGDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=717759 NR798_RS07860 WP_375770810.1 1973587..1974108(+) (ssb) [Archangium gephyra strain SDU49]
ATGGCTGGAGGAGTCAACAAGGTCATCCTCATCGGCAACCTTGGCGCGGACCCGGAAGTGCGGTTCACCCCGGGCGGCCA
GGCAGTGGCCAACTTCCGTATCGCGACCAGCGACACCTGGACCGACAAGAACGGCCAGAAGCAGGAGCGCACGGAGTGGC
ACCGCATCGTGGTGTGGGGGAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGCCGTCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGGGAGTGGACCGACAAGGAGAATCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCGGTGACCTT
CCTCGGCGGCCGTGATGGCGCCGGCGCGGGTGCGGGCGGTGGCGGCGGTGGTGCCCGCGGCGGTGGCTACTCGCAGCAGC
GTGGCGGGGGCCAGCAGCAGGGCGGTTACGACGACTACGGTCCGCCCCCCATGGGCATGGACGAGGGCGGCGGCGGCGGC
GGTGGTGGCAGCGGCGGTGGAGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.989

100

0.497
  ssb Neisseria meningitidis MC58

42.775

100

0.428
  ssb Neisseria gonorrhoeae MS11

42.775

100

0.428
  ssb Glaesserella parasuis strain SC1401

40.217

100

0.428