Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NR792_RS32360 Genome accession   NZ_CP102577
Coordinates   8055145..8055654 (+) Length   169 a.a.
NCBI ID   WP_375756575.1    Uniprot ID   -
Organism   Corallococcus exercitus strain SDU142     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8050145..8060654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR792_RS32350 (NR792_32410) - 8050894..8052510 (-) 1617 WP_375756573.1 ABC transporter substrate-binding protein -
  NR792_RS32355 (NR792_32415) dacB 8052645..8054882 (+) 2238 WP_375756574.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  NR792_RS32360 (NR792_32420) ssb 8055145..8055654 (+) 510 WP_375756575.1 single-stranded DNA-binding protein Machinery gene
  NR792_RS32365 (NR792_32425) - 8055771..8056454 (-) 684 WP_375756576.1 succinate dehydrogenase -
  NR792_RS32370 (NR792_32430) - 8056728..8057621 (+) 894 WP_375756577.1 Hsp33 family molecular chaperone HslO -
  NR792_RS32375 (NR792_32435) - 8057793..8058488 (+) 696 WP_375756578.1 phosphoribosyltransferase -
  NR792_RS32380 (NR792_32440) selB 8058531..8060459 (+) 1929 WP_375756579.1 selenocysteine-specific translation elongation factor -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18142.02 Da        Isoelectric Point: 5.8058

>NTDB_id=717751 NR792_RS32360 WP_375756575.1 8055145..8055654(+) (ssb) [Corallococcus exercitus strain SDU142]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWNDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCFVEG
RLQTREWMDKENKKNYTTEVVATSVTFLGGRDAGEGYSGGAGGGRRQQQGNGGYGQGRDDYGQPPPMGMDDGGGMGGNHG
GAADEDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=717751 NR792_RS32360 WP_375756575.1 8055145..8055654(+) (ssb) [Corallococcus exercitus strain SDU142]
ATGGCTGGAGGCGTGAACAAGGTCATTCTCATCGGCAATCTCGGGGCGGACCCCGAGGTGCGCTTCACCCCGGGCGGTCA
GGCCGTGGCGAACTTCCGCATCGCGACGAGCGAGAGCTGGAACGACAAGAACGGCCAGAAGCAGGAGCGCACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTGTGCGGCGAGTACCTCAAGAAGGGACGGCAGTGCTTCGTCGAAGGC
CGTCTGCAGACGCGCGAGTGGATGGATAAGGAGAACAAGAAGAACTACACCACCGAGGTCGTCGCCACCTCCGTCACCTT
CCTCGGCGGCCGTGACGCCGGTGAGGGCTACAGCGGCGGCGCGGGTGGTGGGCGCCGGCAGCAGCAGGGCAACGGCGGCT
ACGGGCAGGGGCGTGACGACTACGGCCAGCCGCCTCCCATGGGCATGGACGACGGTGGCGGCATGGGCGGCAACCACGGC
GGCGCGGCGGACGAAGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.989

100

0.509
  ssb Neisseria gonorrhoeae MS11

48.936

83.432

0.408
  ssb Neisseria meningitidis MC58

48.936

83.432

0.408
  ssb Glaesserella parasuis strain SC1401

47.222

85.207

0.402