Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NUU08_RS12025 | Genome accession | NZ_CP102522 |
| Coordinates | 2345092..2345592 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain R-707-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2341156..2366915 | 2345092..2345592 | within | 0 |
Gene organization within MGE regions
Location: 2341156..2366915
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NUU08_RS12000 (NUU08_11995) | gnd | 2341156..2342061 (-) | 906 | WP_032398514.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| NUU08_RS12005 (NUU08_12000) | - | 2342425..2343273 (+) | 849 | WP_003131770.1 | MurR/RpiR family transcriptional regulator | - |
| NUU08_RS12010 (NUU08_12005) | - | 2343311..2343619 (+) | 309 | WP_017865196.1 | DUF960 domain-containing protein | - |
| NUU08_RS12015 (NUU08_12010) | - | 2343701..2344474 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| NUU08_RS12020 (NUU08_12015) | rpsR | 2344674..2344919 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| NUU08_RS12025 (NUU08_12020) | ssb | 2345092..2345592 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| NUU08_RS12030 (NUU08_12025) | rpsF | 2345622..2345915 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| NUU08_RS12035 (NUU08_12030) | - | 2346107..2346961 (-) | 855 | WP_058221735.1 | undecaprenyl-diphosphate phosphatase | - |
| NUU08_RS12040 (NUU08_12035) | - | 2347484..2348950 (+) | 1467 | WP_017865200.1 | amino acid permease | - |
| NUU08_RS12045 (NUU08_12040) | dnaX | 2348985..2350643 (-) | 1659 | WP_058221736.1 | DNA polymerase III subunit gamma/tau | - |
| NUU08_RS12050 (NUU08_12045) | - | 2350692..2351333 (-) | 642 | WP_003131958.1 | phosphotransferase | - |
| NUU08_RS12055 (NUU08_12050) | - | 2351364..2351852 (-) | 489 | WP_003131959.1 | GAF domain-containing protein | - |
| NUU08_RS12060 (NUU08_12055) | - | 2351936..2352208 (+) | 273 | WP_003131960.1 | chorismate mutase | - |
| NUU08_RS12065 (NUU08_12060) | - | 2352296..2352742 (-) | 447 | WP_003131961.1 | hypothetical protein | - |
| NUU08_RS12070 (NUU08_12065) | - | 2353032..2354216 (-) | 1185 | WP_058221737.1 | site-specific integrase | - |
| NUU08_RS12075 (NUU08_12070) | - | 2354715..2354909 (-) | 195 | WP_058221577.1 | hypothetical protein | - |
| NUU08_RS12080 (NUU08_12075) | - | 2355713..2356027 (-) | 315 | WP_011835952.1 | hypothetical protein | - |
| NUU08_RS12085 (NUU08_12080) | - | 2356762..2357706 (-) | 945 | WP_058221334.1 | Abi family protein | - |
| NUU08_RS12090 (NUU08_12085) | - | 2358167..2358361 (-) | 195 | WP_021212116.1 | hypothetical protein | - |
| NUU08_RS12095 | - | 2358375..2358527 (-) | 153 | WP_153927783.1 | hypothetical protein | - |
| NUU08_RS12100 (NUU08_12090) | - | 2358997..2359188 (-) | 192 | Protein_2353 | helix-turn-helix domain-containing protein | - |
| NUU08_RS12105 (NUU08_12095) | - | 2359448..2359645 (+) | 198 | WP_011677058.1 | hypothetical protein | - |
| NUU08_RS12110 (NUU08_12100) | - | 2359649..2359897 (+) | 249 | WP_058221815.1 | hypothetical protein | - |
| NUU08_RS12115 (NUU08_12105) | - | 2360012..2360206 (+) | 195 | WP_058221814.1 | DUF1655 domain-containing protein | - |
| NUU08_RS12120 (NUU08_12110) | - | 2360210..2360734 (+) | 525 | WP_082225264.1 | hypothetical protein | - |
| NUU08_RS12125 (NUU08_12115) | - | 2360731..2360982 (+) | 252 | WP_082225265.1 | helix-turn-helix transcriptional regulator | - |
| NUU08_RS12130 (NUU08_12120) | - | 2360979..2361260 (+) | 282 | WP_082225266.1 | hypothetical protein | - |
| NUU08_RS12135 (NUU08_12125) | - | 2361303..2361542 (+) | 240 | WP_058221371.1 | hypothetical protein | - |
| NUU08_RS12140 (NUU08_12130) | - | 2361539..2361793 (+) | 255 | WP_039114370.1 | hypothetical protein | - |
| NUU08_RS12145 (NUU08_12135) | - | 2361790..2361984 (+) | 195 | WP_047687087.1 | hypothetical protein | - |
| NUU08_RS12150 (NUU08_12140) | - | 2361971..2362300 (+) | 330 | WP_058221372.1 | hypothetical protein | - |
| NUU08_RS12155 (NUU08_12145) | - | 2362304..2363098 (+) | 795 | WP_082225267.1 | bifunctional DNA primase/polymerase | - |
| NUU08_RS12160 (NUU08_12150) | - | 2363109..2364743 (+) | 1635 | WP_082225268.1 | phage/plasmid primase, P4 family | - |
| NUU08_RS12165 (NUU08_12155) | - | 2364956..2365138 (+) | 183 | WP_003131978.1 | hypothetical protein | - |
| NUU08_RS12170 (NUU08_12160) | - | 2365165..2365773 (+) | 609 | WP_003131979.1 | hypothetical protein | - |
| NUU08_RS12175 (NUU08_12165) | - | 2365782..2366372 (+) | 591 | WP_003131980.1 | HK97 family phage prohead protease | - |
| NUU08_RS12180 (NUU08_12170) | - | 2366586..2366915 (+) | 330 | WP_003131981.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=717471 NUU08_RS12025 WP_003131953.1 2345092..2345592(-) (ssb) [Lactococcus lactis strain R-707-1]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=717471 NUU08_RS12025 WP_003131953.1 2345092..2345592(-) (ssb) [Lactococcus lactis strain R-707-1]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |