Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NUG39_RS22280 Genome accession   NZ_CP102500
Coordinates   4632124..4632648 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter youngae strain CF10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4627124..4637648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUG39_RS22270 (NUG39_22270) - 4628967..4629248 (+) 282 WP_048213921.1 YjcB family protein -
  NUG39_RS22275 (NUG39_22275) - 4629332..4631641 (-) 2310 WP_257748453.1 autotransporter outer membrane beta-barrel domain-containing protein -
  NUG39_RS22280 (NUG39_22280) ssb 4632124..4632648 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NUG39_RS22285 (NUG39_22285) uvrA 4632900..4635722 (+) 2823 WP_137375831.1 excinuclease ABC subunit UvrA -
  NUG39_RS22290 (NUG39_22290) - 4635800..4636156 (-) 357 WP_048213923.1 MmcQ/YjbR family DNA-binding protein -
  NUG39_RS22295 (NUG39_22295) aphA 4636277..4636990 (-) 714 WP_048213924.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=717343 NUG39_RS22280 WP_003826621.1 4632124..4632648(-) (ssb) [Citrobacter youngae strain CF10]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=717343 NUG39_RS22280 WP_003826621.1 4632124..4632648(-) (ssb) [Citrobacter youngae strain CF10]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAATACACCACTGAAGTCGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGCGGCGGCGCGCCGGCAGGTGGTGGTCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGTGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5