Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NQE15_RS02980 Genome accession   NZ_CP102486
Coordinates   612128..612589 (+) Length   153 a.a.
NCBI ID   WP_265946380.1    Uniprot ID   -
Organism   Dechloromonas sp. A34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 607128..617589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQE15_RS02965 uvrA 607488..610313 (-) 2826 WP_265946374.1 excinuclease ABC subunit UvrA -
  NQE15_RS02970 - 610496..610693 (-) 198 WP_265946376.1 hypothetical protein -
  NQE15_RS02975 - 610929..612116 (+) 1188 WP_265946378.1 MFS transporter -
  NQE15_RS02980 ssb 612128..612589 (+) 462 WP_265946380.1 single-stranded DNA-binding protein Machinery gene
  NQE15_RS02985 - 612675..612968 (-) 294 WP_265946382.1 hypothetical protein -
  NQE15_RS02990 - 613023..613223 (+) 201 WP_265946383.1 hypothetical protein -
  NQE15_RS02995 - 613240..614382 (+) 1143 WP_265946384.1 6-bladed beta-propeller -
  NQE15_RS03000 - 614528..614854 (+) 327 WP_265946385.1 hypothetical protein -
  NQE15_RS03005 - 614842..616167 (+) 1326 WP_265946387.1 acyl-protein synthetase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16745.77 Da        Isoelectric Point: 5.9641

>NTDB_id=717243 NQE15_RS02980 WP_265946380.1 612128..612589(+) (ssb) [Dechloromonas sp. A34]
MASVNKAIIVGNLGKDPEVRYTASGEAMCNITVATSENWKDKATGEKKELTEWHRISFFGKLAEICGQYLKKGSQVYVEG
SIRTRKWTDKDGQERYTTEIRGDEMKMLGSRQGMGAPAGGGGGYDSEPTDYAPAPAKNKPKPSFDDLGDDIPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=717243 NQE15_RS02980 WP_265946380.1 612128..612589(+) (ssb) [Dechloromonas sp. A34]
ATGGCATCGGTTAACAAGGCAATCATCGTCGGTAATCTGGGCAAGGACCCGGAGGTTCGTTACACCGCCAGCGGCGAGGC
GATGTGCAACATCACGGTGGCGACCAGCGAAAACTGGAAGGACAAGGCAACCGGCGAGAAGAAGGAACTGACGGAATGGC
ATCGCATTTCATTTTTCGGCAAGCTCGCCGAAATCTGCGGTCAATATCTGAAGAAGGGCTCGCAGGTCTATGTCGAAGGC
AGCATTCGCACCCGTAAATGGACCGACAAGGATGGCCAGGAGCGCTACACCACCGAGATTCGCGGCGATGAAATGAAGAT
GCTGGGCTCGCGCCAGGGCATGGGCGCACCGGCCGGTGGCGGCGGCGGTTACGATAGCGAACCGACCGACTACGCGCCGG
CCCCGGCCAAGAACAAGCCGAAGCCCTCGTTCGACGATCTGGGCGACGATATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.829

100

0.601
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.569
  ssb Neisseria gonorrhoeae MS11

46.857

100

0.536
  ssb Neisseria meningitidis MC58

46.857

100

0.536