Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NUH88_RS00120 Genome accession   NZ_CP102480
Coordinates   22763..23278 (+) Length   171 a.a.
NCBI ID   WP_257769153.1    Uniprot ID   A0A9J7AR78
Organism   Nisaea acidiphila strain MEBiC11861     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 17763..28278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUH88_RS00105 (NUH88_00105) - 18356..19261 (-) 906 WP_257769149.1 DMT family transporter -
  NUH88_RS00110 (NUH88_00110) - 19393..19689 (+) 297 WP_257769150.1 helix-turn-helix domain-containing protein -
  NUH88_RS00115 (NUH88_00115) uvrA 19699..22563 (-) 2865 WP_257769151.1 excinuclease ABC subunit UvrA -
  NUH88_RS00120 (NUH88_00120) ssb 22763..23278 (+) 516 WP_257769153.1 single-stranded DNA-binding protein Machinery gene
  NUH88_RS00125 (NUH88_00125) - 23448..24176 (+) 729 WP_257769155.1 haloacid dehalogenase type II -
  NUH88_RS00130 (NUH88_00130) - 24163..25335 (+) 1173 WP_257769156.1 CaiB/BaiF CoA-transferase family protein -
  NUH88_RS00135 (NUH88_00135) - 25360..26262 (+) 903 WP_257769157.1 LysR family transcriptional regulator -
  NUH88_RS00140 (NUH88_00140) - 26378..27205 (+) 828 WP_257769159.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18184.84 Da        Isoelectric Point: 5.0346

>NTDB_id=717220 NUH88_RS00120 WP_257769153.1 22763..23278(+) (ssb) [Nisaea acidiphila strain MEBiC11861]
MAGSVNKVILVGNLGRDPDIRSMQDGNKVVNLSVATSETWRDRNSGERRERTEWHRVVIFNENLAKVAEQYLRKGSKVYV
EGQLQTRKWTDQSGQEKYSTEVVLQRFRGELQMLDGRGEGGGGQGGGYGGDDGFNQGGGYGGGSGGGYGGGSGGGQPPVG
GPGDLDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=717220 NUH88_RS00120 WP_257769153.1 22763..23278(+) (ssb) [Nisaea acidiphila strain MEBiC11861]
ATGGCAGGCAGCGTCAACAAGGTCATTCTCGTCGGCAATCTCGGTCGCGACCCGGATATCCGGAGCATGCAGGACGGCAA
CAAGGTCGTGAACCTCTCCGTCGCAACGTCGGAGACCTGGCGTGATCGGAACAGCGGCGAGCGCCGCGAGCGCACGGAAT
GGCACAGGGTGGTGATCTTCAACGAGAACCTCGCCAAGGTTGCCGAGCAGTATCTTCGCAAAGGCTCGAAGGTCTATGTC
GAAGGTCAGCTGCAGACCAGGAAATGGACCGACCAGTCGGGACAGGAGAAATACTCGACCGAGGTCGTGCTGCAGCGTTT
CCGCGGCGAGCTCCAGATGCTCGATGGGCGCGGCGAAGGCGGCGGCGGTCAGGGCGGCGGCTATGGCGGTGACGACGGGT
TCAACCAGGGCGGCGGGTACGGCGGCGGCTCGGGTGGCGGATATGGCGGTGGCAGCGGGGGCGGCCAGCCTCCGGTTGGC
GGGCCGGGCGATCTCGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.802

100

0.556
  ssb Vibrio cholerae strain A1552

50.857

100

0.52
  ssb Neisseria meningitidis MC58

42.458

100

0.444
  ssb Neisseria gonorrhoeae MS11

42.458

100

0.444