NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	NUT31_RS14090	Genome accession	NZ_CP102454
Coordinates	3134233..3135105 (+)	Length	290 a.a.
NCBI ID	WP_268013899.1	Uniprot ID	-
Organism	Aeromonas sp. BC14
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3129233..3140105

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NUT31_RS14070 (NUT31_14065)	nadC	3129529..3130386 (+)	858	WP_268013895.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NUT31_RS14075 (NUT31_14070)	-	3130709..3131143 (+)	435	WP_268013896.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NUT31_RS14080 (NUT31_14075)	pilB	3131147..3132853 (+)	1707	WP_268013897.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NUT31_RS14085 (NUT31_14080)	pilC	3132969..3134210 (+)	1242	WP_268013898.1	type II secretion system F family protein	Machinery gene
NUT31_RS14090 (NUT31_14085)	pilD	3134233..3135105 (+)	873	WP_268013899.1	A24 family peptidase	Machinery gene
NUT31_RS14095 (NUT31_14090)	coaE	3135124..3135738 (+)	615	WP_268013901.1	dephospho-CoA kinase	-
NUT31_RS14100 (NUT31_14095)	zapD	3135776..3136498 (+)	723	WP_024945431.1	cell division protein ZapD	-
NUT31_RS14105 (NUT31_14100)	yacG	3136508..3136702 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
NUT31_RS14110 (NUT31_14105)	mutT	3136763..3137176 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
NUT31_RS14115 (NUT31_14110)	-	3137185..3138369 (-)	1185	WP_268013902.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32598.91 Da Isoelectric Point: 6.7409

                                >NTDB_id=717129 NUT31_RS14090 WP_268013899.1 3134233..3135105(+) (pilD) [Aeromonas sp. BC14]

MLIITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA

ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATYPPGWALLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLTGGFVPLTDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL

VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=717129 NUT31_RS14090 WP_268013899.1 3134233..3135105(+) (pilD) [Aeromonas sp. BC14]

ATGTTGATTATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTTCTCTTTTCCCTGATGATCGG

CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA

ATCCGGAAACACAGCCTCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGATCTGCCTGTCCCCATTGCGGCCATGCC

ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC

GGCCCGTTATCCCCTGGTAGAGCTGCTGACAGCCCTGCTCTCGCTGGTCGTCGCCGCAACATACCCACCGGGCTGGGCCT

TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG

CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAACCTGACAGGGGGATTTGTACCGCTGACCGATGCGGTGATCGG

TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG

GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCTTCGCTG

GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT

GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	61.189	98.621	0.603
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	49.451	94.138	0.466

Detailed information NTG0717129