Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ZBT109_RS08225 | Genome accession | NZ_AP018933 |
| Coordinates | 1844404..1844949 (-) | Length | 181 a.a. |
| NCBI ID | WP_027705962.1 | Uniprot ID | - |
| Organism | Zymobacter palmae strain IAM14233 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1836725..1873056 | 1844404..1844949 | within | 0 |
Gene organization within MGE regions
Location: 1836725..1873056
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ZBT109_RS08160 (ZBT109_1675) | - | 1836725..1837324 (+) | 600 | WP_027705952.1 | hypothetical protein | - |
| ZBT109_RS08170 (ZBT109_1677) | - | 1837659..1838927 (+) | 1269 | WP_038279277.1 | tyrosine-type recombinase/integrase | - |
| ZBT109_RS08175 | - | 1839377..1839709 (-) | 333 | WP_051524172.1 | DUF6378 domain-containing protein | - |
| ZBT109_RS08180 | - | 1839930..1840268 (-) | 339 | WP_027705953.1 | hypothetical protein | - |
| ZBT109_RS08185 (ZBT109_1679) | - | 1840312..1841160 (-) | 849 | WP_027705954.1 | DNA adenine methylase | - |
| ZBT109_RS14035 (ZBT109_1680) | - | 1841165..1841605 (-) | 441 | WP_051524144.1 | MazG-like family protein | - |
| ZBT109_RS08200 | - | 1841955..1842326 (-) | 372 | WP_027705957.1 | hypothetical protein | - |
| ZBT109_RS08205 | - | 1842369..1842734 (-) | 366 | WP_145984505.1 | hypothetical protein | - |
| ZBT109_RS08210 | - | 1842739..1843002 (-) | 264 | WP_027705959.1 | hypothetical protein | - |
| ZBT109_RS08215 | - | 1843085..1843441 (-) | 357 | WP_027705960.1 | hypothetical protein | - |
| ZBT109_RS08220 (ZBT109_1681) | - | 1843441..1844394 (-) | 954 | WP_027705961.1 | recombination-associated protein RdgC | - |
| ZBT109_RS08225 (ZBT109_1682) | ssb | 1844404..1844949 (-) | 546 | WP_027705962.1 | single-stranded DNA-binding protein | Machinery gene |
| ZBT109_RS08230 (ZBT109_1683) | recT | 1844960..1845751 (-) | 792 | WP_084261900.1 | recombination protein RecT | - |
| ZBT109_RS08235 (ZBT109_1684) | - | 1845748..1846578 (-) | 831 | WP_197714330.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| ZBT109_RS08240 | - | 1846643..1846885 (-) | 243 | WP_027705964.1 | hypothetical protein | - |
| ZBT109_RS08245 (ZBT109_1685) | - | 1847046..1847402 (-) | 357 | WP_027705965.1 | hypothetical protein | - |
| ZBT109_RS08250 (ZBT109_1686) | - | 1847412..1847630 (-) | 219 | WP_145984506.1 | hypothetical protein | - |
| ZBT109_RS08255 (ZBT109_1687) | - | 1847688..1847933 (-) | 246 | WP_027705967.1 | hypothetical protein | - |
| ZBT109_RS08260 (ZBT109_1688) | - | 1847997..1849103 (-) | 1107 | WP_027705968.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ZBT109_RS13615 | - | 1849120..1849812 (-) | 693 | WP_145984507.1 | hypothetical protein | - |
| ZBT109_RS13855 | - | 1850303..1850548 (-) | 246 | WP_156934051.1 | hypothetical protein | - |
| ZBT109_RS08270 | - | 1850813..1851265 (-) | 453 | WP_027705970.1 | hypothetical protein | - |
| ZBT109_RS08275 (ZBT109_1690) | - | 1851383..1852279 (-) | 897 | WP_027705971.1 | hypothetical protein | - |
| ZBT109_RS08280 | - | 1852306..1852845 (-) | 540 | WP_051524146.1 | hypothetical protein | - |
| ZBT109_RS08285 (ZBT109_1691) | - | 1853039..1853737 (-) | 699 | WP_027705972.1 | helix-turn-helix transcriptional regulator | - |
| ZBT109_RS08290 | - | 1853893..1854105 (+) | 213 | WP_027705973.1 | helix-turn-helix transcriptional regulator | - |
| ZBT109_RS08295 (ZBT109_1692) | - | 1854209..1855129 (+) | 921 | WP_038279282.1 | helix-turn-helix domain-containing protein | - |
| ZBT109_RS08300 (ZBT109_1693) | - | 1855123..1855428 (+) | 306 | WP_051524148.1 | hypothetical protein | - |
| ZBT109_RS08305 (ZBT109_1694) | - | 1855365..1856297 (+) | 933 | WP_084261902.1 | DUF3383 family protein | - |
| ZBT109_RS08310 (ZBT109_1695) | - | 1856310..1856747 (+) | 438 | WP_038279285.1 | phage tail fiber protein | - |
| ZBT109_RS08315 (ZBT109_1696) | - | 1856748..1857161 (+) | 414 | WP_027705974.1 | hypothetical protein | - |
| ZBT109_RS08320 | - | 1857209..1857367 (+) | 159 | WP_120185355.1 | transcription elongation factor GreA | - |
| ZBT109_RS08325 (ZBT109_1697) | - | 1857364..1859805 (+) | 2442 | WP_027705975.1 | lytic transglycosylase domain-containing protein | - |
| ZBT109_RS08330 (ZBT109_1698) | - | 1859798..1860547 (+) | 750 | WP_027705976.1 | phage baseplate protein | - |
| ZBT109_RS08335 (ZBT109_1699) | - | 1860544..1860837 (+) | 294 | WP_027705977.1 | hypothetical protein | - |
| ZBT109_RS08340 | - | 1861000..1861668 (+) | 669 | WP_051524150.1 | NYN domain-containing protein | - |
| ZBT109_RS08345 | - | 1861790..1862455 (+) | 666 | WP_027705978.1 | hypothetical protein | - |
| ZBT109_RS08350 (ZBT109_1700) | - | 1862516..1863409 (+) | 894 | WP_027705979.1 | baseplate hub protein | - |
| ZBT109_RS08355 (ZBT109_1701) | - | 1863402..1864130 (+) | 729 | WP_051524151.1 | Gp138 family membrane-puncturing spike protein | - |
| ZBT109_RS08360 (ZBT109_1702) | - | 1864141..1864434 (+) | 294 | WP_027705981.1 | hypothetical protein | - |
| ZBT109_RS08365 (ZBT109_1703) | - | 1864510..1864863 (+) | 354 | WP_038279288.1 | hypothetical protein | - |
| ZBT109_RS08370 (ZBT109_1704) | - | 1864873..1866087 (+) | 1215 | WP_038279291.1 | baseplate J/gp47 family protein | - |
| ZBT109_RS08375 (ZBT109_1705) | - | 1866084..1866689 (+) | 606 | WP_051524152.1 | DUF2612 domain-containing protein | - |
| ZBT109_RS08380 (ZBT109_1706) | - | 1866693..1868462 (+) | 1770 | WP_051524153.1 | hypothetical protein | - |
| ZBT109_RS08385 | - | 1868472..1868924 (+) | 453 | WP_051524154.1 | tail fiber assembly protein | - |
| ZBT109_RS08390 | - | 1868989..1869276 (-) | 288 | WP_027705984.1 | hypothetical protein | - |
| ZBT109_RS08400 | - | 1869918..1870373 (+) | 456 | WP_027705985.1 | hypothetical protein | - |
| ZBT109_RS08405 | - | 1870370..1870807 (+) | 438 | WP_051524155.1 | hypothetical protein | - |
| ZBT109_RS08410 (ZBT109_1707) | - | 1870962..1871975 (-) | 1014 | WP_027705986.1 | IS30 family transposase | - |
| ZBT109_RS08420 | - | 1872466..1873056 (+) | 591 | WP_145984508.1 | LuxR C-terminal-related transcriptional regulator | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20286.28 Da Isoelectric Point: 6.4673
>NTDB_id=71710 ZBT109_RS08225 WP_027705962.1 1844404..1844949(-) (ssb) [Zymobacter palmae strain IAM14233]
MARGVNKVVAIGNLGQDPDIRFLPSGNPVANFSIAVSESWTDKNTGQKQERTEWIKCVAFNKLAEIIQQYVHKGSKVYVE
GKLQTRKWQAQDGTDRYSTEVVINDLQMLDSRNGGQQQGQQGGYQPQQPVQQNQQRPQQAQQPQQYQPQQPNQYAQQSGG
TAAPQHGAPQGFDDFNDEIPF
MARGVNKVVAIGNLGQDPDIRFLPSGNPVANFSIAVSESWTDKNTGQKQERTEWIKCVAFNKLAEIIQQYVHKGSKVYVE
GKLQTRKWQAQDGTDRYSTEVVINDLQMLDSRNGGQQQGQQGGYQPQQPVQQNQQRPQQAQQPQQYQPQQPNQYAQQSGG
TAAPQHGAPQGFDDFNDEIPF
Nucleotide
Download Length: 546 bp
>NTDB_id=71710 ZBT109_RS08225 WP_027705962.1 1844404..1844949(-) (ssb) [Zymobacter palmae strain IAM14233]
ATGGCACGCGGAGTCAATAAGGTCGTTGCCATTGGCAACTTGGGGCAAGACCCCGACATCCGGTTCCTGCCATCGGGCAA
TCCGGTGGCGAACTTCTCAATCGCAGTCAGCGAATCGTGGACGGACAAGAACACTGGTCAGAAGCAGGAGCGCACCGAGT
GGATCAAGTGCGTCGCCTTCAACAAGCTGGCCGAGATCATCCAGCAGTACGTCCACAAAGGCAGCAAGGTTTACGTCGAA
GGCAAGCTACAGACGCGCAAGTGGCAGGCTCAGGACGGCACGGATCGTTATTCGACCGAGGTGGTCATCAACGATCTGCA
GATGCTGGATAGCCGGAACGGTGGTCAGCAGCAGGGCCAGCAAGGCGGCTACCAACCTCAACAACCCGTGCAGCAGAATC
AGCAGCGGCCCCAGCAAGCCCAACAACCGCAGCAATATCAGCCCCAGCAGCCTAATCAGTATGCACAGCAGAGTGGCGGC
ACCGCAGCGCCCCAACACGGCGCGCCGCAGGGTTTCGACGATTTTAACGATGAGATTCCATTCTAG
ATGGCACGCGGAGTCAATAAGGTCGTTGCCATTGGCAACTTGGGGCAAGACCCCGACATCCGGTTCCTGCCATCGGGCAA
TCCGGTGGCGAACTTCTCAATCGCAGTCAGCGAATCGTGGACGGACAAGAACACTGGTCAGAAGCAGGAGCGCACCGAGT
GGATCAAGTGCGTCGCCTTCAACAAGCTGGCCGAGATCATCCAGCAGTACGTCCACAAAGGCAGCAAGGTTTACGTCGAA
GGCAAGCTACAGACGCGCAAGTGGCAGGCTCAGGACGGCACGGATCGTTATTCGACCGAGGTGGTCATCAACGATCTGCA
GATGCTGGATAGCCGGAACGGTGGTCAGCAGCAGGGCCAGCAAGGCGGCTACCAACCTCAACAACCCGTGCAGCAGAATC
AGCAGCGGCCCCAGCAAGCCCAACAACCGCAGCAATATCAGCCCCAGCAGCCTAATCAGTATGCACAGCAGAGTGGCGGC
ACCGCAGCGCCCCAACACGGCGCGCCGCAGGGTTTCGACGATTTTAACGATGAGATTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
48.969 |
100 |
0.525 |
| ssb | Glaesserella parasuis strain SC1401 |
48.148 |
100 |
0.503 |
| ssb | Neisseria meningitidis MC58 |
42.077 |
100 |
0.425 |
| ssb | Neisseria gonorrhoeae MS11 |
41.848 |
100 |
0.425 |