Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PQQ28_RS23100 Genome accession   NZ_CP117235
Coordinates   4690573..4691109 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ATCC 25922     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4685573..4696109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQQ28_RS23080 (PQQ28_23085) soxR 4687302..4687766 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  PQQ28_RS23085 (PQQ28_23090) soxS 4687852..4688175 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PQQ28_RS23090 (PQQ28_23095) pdeC 4688211..4689764 (-) 1554 WP_001327775.1 c-di-GMP phosphodiesterase PdeC -
  PQQ28_RS23095 (PQQ28_23100) yjcB 4690193..4690474 (+) 282 WP_001304710.1 YjcB family protein -
  PQQ28_RS23100 (PQQ28_23105) ssb 4690573..4691109 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PQQ28_RS23105 (PQQ28_23110) uvrA 4691364..4694186 (+) 2823 WP_000357764.1 excinuclease ABC subunit UvrA Machinery gene
  PQQ28_RS23110 (PQQ28_23115) yjbR 4694221..4694577 (-) 357 WP_000155661.1 MmcQ/YjbR family DNA-binding protein -
  PQQ28_RS23115 (PQQ28_23120) yjbQ 4694581..4694997 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PQQ28_RS23120 (PQQ28_23125) aphA 4695108..4695821 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=717052 PQQ28_RS23100 WP_000168305.1 4690573..4691109(-) (ssb) [Escherichia coli strain ATCC 25922]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=717052 PQQ28_RS23100 WP_000168305.1 4690573..4691109(-) (ssb) [Escherichia coli strain ATCC 25922]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489