Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PQS35_RS20605 Genome accession   NZ_CP117044
Coordinates   4245731..4246267 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain B-DolR     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4240731..4251267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQS35_RS20585 aphA 4241019..4241732 (+) 714 WP_001395166.1 acid phosphatase AphA -
  PQS35_RS20590 yjbQ 4241843..4242259 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PQS35_RS20595 yjbR 4242263..4242619 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  PQS35_RS20600 uvrA 4242654..4245476 (-) 2823 WP_000357744.1 excinuclease ABC subunit UvrA Machinery gene
  PQS35_RS20605 ssb 4245731..4246267 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PQS35_RS20610 yjcB 4246366..4246647 (-) 282 WP_001295689.1 YjcB family protein -
  PQS35_RS20615 pdeC 4247077..4248663 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  PQS35_RS20620 soxS 4248666..4248989 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PQS35_RS20625 soxR 4249075..4249539 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=716639 PQS35_RS20605 WP_000168305.1 4245731..4246267(+) (ssb) [Escherichia coli strain B-DolR]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=716639 PQS35_RS20605 WP_000168305.1 4245731..4246267(+) (ssb) [Escherichia coli strain B-DolR]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489