Detailed information NTG0716615

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: PQS35_RS16950
• Genome accession: NZ_CP117044
• Coordinates: 3446007..3447245 (-)
• Length: 412 a.a.
• NCBI ID: WP_000815968.1
• Uniprot ID: -
• Organism: Escherichia coli strain B-DolR
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3441007..3452245

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PQS35_RS16930	dam	3441619..3442455 (-)	837	WP_000742143.1	adenine-specific DNA-methyltransferase	-
PQS35_RS16935	damX	3442562..3443848 (-)	1287	WP_000343193.1	cell division protein DamX	-
PQS35_RS16940	aroB	3443940..3445028 (-)	1089	WP_000439846.1	3-dehydroquinate synthase	-
PQS35_RS16945	aroK	3445085..3445606 (-)	522	WP_000818618.1	shikimate kinase AroK	-
PQS35_RS16950	comE	3446007..3447245 (-)	1239	WP_000815968.1	DNA uptake porin HofQ	Machinery gene
PQS35_RS16955	hofP	3447157..3447561 (-)	405	WP_001300917.1	DNA utilization protein HofP	-
PQS35_RS16960	hofO	3447551..3447991 (-)	441	WP_001055763.1	DNA utilization protein HofO	-
PQS35_RS16965	hofN	3447975..3448514 (-)	540	WP_001069315.1	DNA utilization protein HofN	-
PQS35_RS16970	hofM	3448514..3449293 (-)	780	WP_001297394.1	DNA utilization protein HofM	-
PQS35_RS16975	mrcA	3449413..3451965 (+)	2553	WP_000673804.1	peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA	-

Sequence

Protein

• Length: 412 a.a.
• Molecular weight: 44774.27 Da
• Isoelectric Point: 6.1173

>NTDB_id=716615 PQS35_RS16950 WP_000815968.1 3446007..3447245(-) (comE) [Escherichia coli strain B-DolR]
MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGL
ITRQEDNILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDN
KTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRIN
GRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKL
HISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERREL
VVFITPRLVSSE

Nucleotide

• Length: 1239 bp

>NTDB_id=716615 PQS35_RS16950 WP_000815968.1 3446007..3447245(-) (comE) [Escherichia coli strain B-DolR]
ATGAAGCAATGGATAGCCGCACTACTGTTGATGCTGATACCCGGCGTACAGGCGGCAAAGCCGCAAAAAGTGACGCTGAT
GGTGGATGACGTTCCGGTAGCTCAGGTGTTGCAGGCGCTGGCTGAACAGGAGAAGTTGAACCTGGTCGTGTCGCCAGACG
TCAGCGGTACGGTGTCGTTACATCTAACAGATGTTCCCTGGAAGCAGGCACTACAAACTGTAGTGAAAAGCGCCGGACTG
ATAACGCGGCAGGAAGACAACATTCTCTCAGTGCATTCCATTGCCTGGCAGAATAACAATATCGCCCGCCAGGAGGCGGA
GCAGGCGCGGGCGCAGGCAAATCTGCCGCTGGAAAATCGCAGTATAACCCTGCAATACGCCGACGCGGGAGAACTGGCGA
AAGCGGGGGAGAAGCTACTGAGTGCCAAAGGGAGTATGACCGTCGATAAACGCACCAATCGCCTTTTGCTACGAGATAAC
AAAACGGCGTTAAGCGCGCTTGAACAGTGGGTAGCGCAAATGGATCTGCCGGTCGGGCAGGTTGAGCTGTCGGCGCATAT
TGTCACCATTAATGAAAAAAGTTTGCGTGAGTTAGGCGTGAAATGGACGCTGGCCGATGCGCAACACGCTGGTGGCGTTG
GGCAAGTCACCACGCTTGGTAGCGACCTCTCCGTAGCGACGGCGACAACGCATGTCGGTTTTAACATTGGGCGCATCAAC
GGACGCTTGCTGGATCTTGAGCTTTCTGCGCTCGAACAAAAACAGCAGCTGGATATTATCGCCAGTCCGCGTCTGCTGGC
CTCACATCTTCAGCCTGCCAGCATTAAACAGGGGAGCGAAATTCCATATCAGGTTTCCAGCGGGGAAAGTGGCGCGACGT
CGGTGGAATTTAAAGAGGCCGTCCTGGGGATGGAGGTCACGCCCACGGTGTTACAAAAAGGTCGCATCCGGCTGAAATTA
CACATCAGCCAGAACGTTCCGGGGCAGGTGCTACAGCAGGCCGATGGCGAAGTGCTGGCGATTGATAAGCAGGAGATCGA
AACGCAGGTCGAGGTCAAAAGCGGAGAAACGTTGGCGCTGGGCGGCATTTTTACCCGTAAAAATAAATCGGGTCAGGATA
GCGTACCGTTGCTTGGCGACATTCCCTGGTTCGGGCAATTATTTCGTCATGACGGAAAAGAAGATGAACGACGCGAGTTA
GTGGTGTTTATCACGCCACGACTGGTTTCCAGTGAGTAA

Domains

Predicted by InterProScan.

• Bacterial type II and III secretion system protein (Secretin) (250-409)

• Bacterial type II/III secretion system short domain (Secretin_N) (120-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae Rd KW20	37.385	100	0.396
comE	Haemophilus influenzae 86-028NP	37.156	100	0.393
pilQ	Vibrio campbellii strain DS40M4	37.767	100	0.386
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	37.288	100	0.374
pilQ	Vibrio cholerae strain A1552	37.288	100	0.374
comE	Glaesserella parasuis strain SC1401	35.952	100	0.367