Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NRZ30_RS10460 Genome accession   NZ_CP102367
Coordinates   2301299..2301877 (+) Length   192 a.a.
NCBI ID   WP_033116044.1    Uniprot ID   A0AAQ0J003
Organism   Aeromonas jandaei strain BC17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2296299..2306877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRZ30_RS10450 (NRZ30_10450) - 2296315..2297988 (-) 1674 WP_268016098.1 diguanylate cyclase -
  NRZ30_RS10455 (NRZ30_10455) uvrA 2298100..2300928 (-) 2829 WP_268016099.1 excinuclease ABC subunit UvrA -
  NRZ30_RS10460 (NRZ30_10460) ssb 2301299..2301877 (+) 579 WP_033116044.1 single-stranded DNA-binding protein Machinery gene
  NRZ30_RS10465 (NRZ30_10465) - 2302105..2302230 (-) 126 WP_019445191.1 hypothetical protein -
  NRZ30_RS10470 (NRZ30_10470) - 2302696..2303598 (+) 903 WP_203132195.1 cation diffusion facilitator family transporter -
  NRZ30_RS10475 (NRZ30_10475) yjbD 2303742..2304026 (+) 285 WP_042032196.1 DUF3811 domain-containing protein -
  NRZ30_RS10480 (NRZ30_10480) - 2304529..2304738 (+) 210 WP_156854046.1 cold-shock protein -
  NRZ30_RS10485 (NRZ30_10485) - 2305011..2306369 (+) 1359 WP_042032197.1 NCS2 family permease -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21259.77 Da        Isoelectric Point: 5.9301

>NTDB_id=716526 NRZ30_RS10460 WP_033116044.1 2301299..2301877(+) (ssb) [Aeromonas jandaei strain BC17]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQQGGWGQPQQAMQQPMNQQRPAAAPQQNMQ
QQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=716526 NRZ30_RS10460 WP_033116044.1 2301299..2301877(+) (ssb) [Aeromonas jandaei strain BC17]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAAGTTTATGTC
GAAGGCAAACTGCAGACTCGCAAATGGCAAGATCAGAGCGGTCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
TACCGGCGTCATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAGCAAGGTG
GCTGGGGTCAACCGCAGCAAGCCATGCAGCAGCCGATGAACCAGCAGCGTCCGGCCGCCGCTCCGCAGCAAAACATGCAG
CAGCAGGGTGGCTACGGCCGTCCGGCCCAGCAGCCCCAGTCTGCCCCGCCGGTCTACAACGAGCCGCCGATGGATTTCGA
CGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.192

100

0.714
  ssb Glaesserella parasuis strain SC1401

54.974

99.479

0.547
  ssb Neisseria gonorrhoeae MS11

47.619

98.438

0.469
  ssb Neisseria meningitidis MC58

47.09

98.438

0.464