Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6K39_RS24975 Genome accession   NZ_AP024135
Coordinates   5577243..5578868 (+) Length   541 a.a.
NCBI ID   WP_221334891.1    Uniprot ID   -
Organism   Streptomyces sp. EAS-AB2608 strain NBRC 114648     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5572243..5583868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K39_RS24940 (EASAB2608_05102) lepB 5572271..5572972 (+) 702 WP_059252840.1 signal peptidase I -
  K6K39_RS24945 (EASAB2608_05103) lepB 5572965..5574056 (+) 1092 WP_094373092.1 signal peptidase I -
  K6K39_RS24950 (EASAB2608_05104) lepB 5573944..5574942 (+) 999 WP_221334890.1 signal peptidase I -
  K6K39_RS24955 (EASAB2608_05105) lepB 5575007..5575792 (+) 786 WP_086699532.1 signal peptidase I -
  K6K39_RS24960 (EASAB2608_05106) - 5575917..5576393 (+) 477 WP_094375137.1 NUDIX hydrolase -
  K6K39_RS24965 (EASAB2608_05107) - 5576450..5576758 (+) 309 WP_014675276.1 DUF2469 domain-containing protein -
  K6K39_RS24970 (EASAB2608_05108) - 5576880..5577242 (+) 363 WP_059252844.1 YraN family protein -
  K6K39_RS24975 (EASAB2608_05109) comM 5577243..5578868 (+) 1626 WP_221334891.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K6K39_RS24980 (EASAB2608_05110) dprA 5578865..5580025 (+) 1161 WP_094373090.1 DNA-processing protein DprA -
  K6K39_RS24985 (EASAB2608_05111) whiG 5580347..5581189 (+) 843 WP_031167347.1 RNA polymerase sigma factor WhiG -
  K6K39_RS24990 (EASAB2608_05112) - 5581254..5581811 (+) 558 WP_059252848.1 TetR/AcrR family transcriptional regulator -
  K6K39_RS24995 (EASAB2608_05113) - 5581997..5582623 (-) 627 WP_260335604.1 M23 family metallopeptidase -
  K6K39_RS25000 (EASAB2608_05114) rpsB 5582898..5583743 (+) 846 WP_221334892.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56428.67 Da        Isoelectric Point: 6.5633

>NTDB_id=71616 K6K39_RS24975 WP_221334891.1 5577243..5578868(+) (comM) [Streptomyces sp. EAS-AB2608 strain NBRC 114648]
MAFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVANSGGEWPQKKLTVGLSPASVPKAGSG
FDLAVACAVLGASERIDPRVLADIVMIGELGLDGRVRPVRGILPAVLAAADAGYEQVVVPECAAAEASLVPGVSVLGVRS
LRQLIAVLADEPVPDEAPDDQGRPDPLLAGLRVPGTGAATGMHSIGAAQHDHDHDLADVVGQISARTAVEVAAAGGHHLF
LEGPPGAGKTMLAERLPAVLPRLTREDSLEVTAVHSVAGLLPPGKPLIDVAPYCAPHHSATMQSLVGGGPGVARPGAVSL
AHRGVLFLDEAPEFHSQTLDALRQPLEAGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSLRDSLCECPPSAIRRYQSR
LSGPLLDRVDLRVEVDPVTRAQLTAPGARGESTATVADRVRQARERTAARLAGTPWRTNSEVPGRELRTRYQAVAGAMDE
AERNLERGVLTARGIDRVLRVAWTVADLVGHDRPDATDVALALQLRTGVPRGVPMAIGALT

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=71616 K6K39_RS24975 WP_221334891.1 5577243..5578868(+) (comM) [Streptomyces sp. EAS-AB2608 strain NBRC 114648]
ATGGCGTTCGCCCGCACATGCTCCGTGGCCCTGGTCGGCGTCGAGGGCGTGGTCGTCGAGGTCCAGGCCGACCTGGAACC
CGGCGTCGCGGCCTTCACCCTGGTGGGCCTCCCGGACAAGAGCCTGACGGAGAGCCGGGACCGGGTACGGGCGGCGGTGG
CGAACTCCGGCGGCGAGTGGCCGCAGAAGAAGCTCACCGTCGGCCTCAGCCCGGCCTCCGTCCCCAAGGCCGGCTCGGGT
TTCGACCTGGCCGTCGCCTGCGCGGTGCTCGGTGCCTCCGAGCGGATCGACCCCCGGGTCCTCGCCGACATCGTCATGAT
CGGAGAGCTGGGCCTGGACGGCCGGGTGCGCCCGGTCCGGGGCATCCTGCCGGCCGTCCTCGCGGCGGCCGACGCGGGCT
ACGAACAGGTGGTCGTACCCGAGTGCGCCGCCGCCGAGGCCTCGCTGGTCCCCGGTGTGTCCGTCCTCGGCGTCCGCAGT
CTGCGGCAGCTCATCGCGGTCCTGGCCGACGAGCCCGTCCCCGACGAGGCACCGGACGACCAGGGACGGCCCGATCCGCT
CCTGGCCGGGCTGCGGGTACCGGGCACGGGCGCCGCCACCGGCATGCACAGCATCGGCGCCGCACAGCACGACCACGATC
ACGACCTGGCCGACGTCGTGGGGCAGATCTCCGCCCGGACGGCCGTGGAGGTGGCGGCGGCCGGCGGACACCATCTGTTC
CTGGAGGGACCGCCCGGCGCCGGTAAGACCATGCTCGCCGAACGCCTTCCCGCCGTCCTGCCCCGGCTCACCCGGGAAGA
TTCGCTGGAGGTCACGGCCGTGCACTCGGTCGCCGGGCTGCTGCCACCGGGCAAGCCGCTCATCGACGTCGCCCCCTACT
GCGCCCCGCACCACTCGGCCACGATGCAGTCACTCGTCGGCGGCGGTCCGGGCGTCGCCCGGCCGGGTGCGGTGTCCCTC
GCCCATCGAGGCGTCCTCTTTCTGGACGAGGCGCCCGAGTTCCACAGCCAGACCCTGGACGCCCTGCGACAGCCGCTGGA
GGCGGGGCACGTCGTCATCGCCCGCAGCGCCGGCGTGGTCCGCTTCCCGGCGCGCTTCCTGATGGTGCTGGCCGCCAACC
CCTGTCCCTGCGGACGGTTCTCGCTCCGCGACTCGCTGTGCGAGTGTCCGCCGTCGGCGATCCGCCGCTACCAGTCCCGG
CTGTCCGGCCCGCTGCTGGACCGGGTGGACCTGCGCGTCGAGGTCGACCCGGTCACCCGGGCCCAGCTCACCGCGCCCGG
CGCCCGCGGAGAGTCCACCGCGACCGTGGCCGACCGGGTACGGCAGGCCCGGGAGCGGACCGCGGCCCGGCTCGCCGGCA
CCCCGTGGCGCACCAACAGCGAGGTGCCCGGCCGCGAGCTGCGGACCCGGTACCAGGCGGTGGCCGGGGCGATGGACGAG
GCCGAACGCAACCTCGAACGGGGCGTGCTCACCGCCCGCGGCATCGATCGCGTCCTCCGCGTCGCCTGGACGGTCGCCGA
CCTCGTCGGACACGACCGCCCGGACGCGACCGACGTCGCCCTGGCCCTGCAACTGCGCACCGGGGTCCCCCGAGGGGTGC
CGATGGCCATCGGAGCCCTGACATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-421)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

40.494

97.227

0.394
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.494

97.227

0.394
  comM Vibrio campbellii strain DS40M4

39.212

98.521

0.386
  comM Acinetobacter baylyi ADP1

39.961

94.824

0.379
  comM Haemophilus influenzae Rd KW20

37.547

97.967

0.368
  comM Legionella pneumophila str. Paris

37.218

98.336

0.366
  comM Legionella pneumophila strain ERS1305867

37.218

98.336

0.366

Multiple sequence alignment