NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	NRK99_RS19980	Genome accession	NZ_CP102326
Coordinates	4351107..4351979 (+)	Length	290 a.a.
NCBI ID	WP_268000069.1	Uniprot ID	-
Organism	Aeromonas dhakensis strain BC04
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4346107..4356979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRK99_RS19960 (NRK99_19960)	nadC	4346410..4347267 (+)	858	WP_010635962.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NRK99_RS19965 (NRK99_19965)	tapA	4347589..4348017 (+)	429	WP_081304776.1	type IVa pilus major pilin TapA	-
NRK99_RS19970 (NRK99_19970)	pilB	4348021..4349727 (+)	1707	WP_017766420.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NRK99_RS19975 (NRK99_19975)	pilC	4349843..4351084 (+)	1242	WP_005305649.1	type II secretion system F family protein	Machinery gene
NRK99_RS19980 (NRK99_19980)	pilD	4351107..4351979 (+)	873	WP_268000069.1	prepilin peptidase	Machinery gene
NRK99_RS19985 (NRK99_19985)	coaE	4351999..4352613 (+)	615	WP_126880609.1	dephospho-CoA kinase	-
NRK99_RS19990 (NRK99_19990)	zapD	4352651..4353373 (+)	723	WP_026141277.1	cell division protein ZapD	-
NRK99_RS19995 (NRK99_19995)	yacG	4353383..4353577 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
NRK99_RS20000 (NRK99_20000)	mutT	4353638..4354051 (-)	414	WP_010635956.1	8-oxo-dGTP diphosphatase MutT	-
NRK99_RS20005 (NRK99_20005)	-	4354060..4355238 (-)	1179	WP_126880610.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32480.78 Da Isoelectric Point: 6.5955

                                >NTDB_id=716149 NRK99_RS19980 WP_268000069.1 4351107..4351979(+) (pilD) [Aeromonas dhakensis strain BC04]

MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEEHYNLMVPRSACPHCGHA

ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWGLLAALLLTWVLAALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLFTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL

VGAIIGISLILLRNHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=716149 NRK99_RS19980 WP_268000069.1 4351107..4351979(+) (pilD) [Aeromonas dhakensis strain BC04]

ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTAGTATTCCTCTTCTCTCTGATGATCGG

CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA

ACCCAGAGACACAACTGCAGCAGGAAGAACACTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC

ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC

GGCCCGTTATCCGCTGGTGGAGCTGTTGACCGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTTCCACCGGGCTGGGGCT

TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGCGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG

CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG

TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGTTCACCGGCAAGGAAGGGATGGGCTACG

GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTGCTGCTGCTCTCCTCCCTG

GTAGGCGCCATCATAGGGATAAGTCTCATCCTGCTGCGCAACCACCATCAGGGCAAACCCATCCCCTTCGGGCCCTACCT

GGCGATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCACGACGTTTCTATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	61.888	98.621	0.61
pilD	Vibrio campbellii strain DS40M4	58.131	99.655	0.579
pilD	Acinetobacter nosocomialis M2	54.577	97.931	0.534
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459

Detailed information NTG0716149