Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NL413_RS21285 Genome accession   NZ_CP117010
Coordinates   4253698..4254234 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain MLI110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4248698..4259234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL413_RS21265 (NL413_021250) soxR 4250426..4250890 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  NL413_RS21270 (NL413_021255) soxS 4250976..4251299 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NL413_RS21275 (NL413_021260) pdeC 4251302..4252888 (-) 1587 Protein_4030 c-di-GMP phosphodiesterase PdeC -
  NL413_RS21280 (NL413_021265) yjcB 4253318..4253599 (+) 282 WP_001295689.1 YjcB family protein -
  NL413_RS21285 (NL413_021270) ssb 4253698..4254234 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NL413_RS21290 (NL413_021275) uvrA 4254488..4257310 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  NL413_RS21295 (NL413_021280) yjbR 4257345..4257701 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NL413_RS21300 (NL413_021285) yjbQ 4257705..4258121 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NL413_RS21305 (NL413_021290) aphA 4258232..4258945 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=716037 NL413_RS21285 WP_000168305.1 4253698..4254234(-) (ssb) [Escherichia coli strain MLI110]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=716037 NL413_RS21285 WP_000168305.1 4253698..4254234(-) (ssb) [Escherichia coli strain MLI110]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489