Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EM6_RS15465 Genome accession   NZ_AP018828
Coordinates   932993..933511 (-) Length   172 a.a.
NCBI ID   WP_126424015.1    Uniprot ID   -
Organism   Asticcacaulis excentricus strain M6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 927993..938511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM6_RS15445 (EM6_3063) - 928052..928495 (+) 444 WP_126424011.1 COG3650 family protein -
  EM6_RS15450 (EM6_3064) - 928550..929383 (-) 834 WP_126424012.1 peptidylprolyl isomerase -
  EM6_RS15455 (EM6_3065) coaD 929383..929874 (-) 492 WP_126424013.1 pantetheine-phosphate adenylyltransferase -
  EM6_RS15460 (EM6_3066) gyrA 929909..932665 (-) 2757 WP_126424014.1 DNA gyrase subunit A -
  EM6_RS15465 (EM6_3067) ssb 932993..933511 (-) 519 WP_126424015.1 single-stranded DNA-binding protein Machinery gene
  EM6_RS15470 (EM6_3068) - 933646..934092 (-) 447 WP_126424016.1 hypothetical protein -
  EM6_RS15475 (EM6_3069) - 934103..934753 (-) 651 WP_013480560.1 hypothetical protein -
  EM6_RS15480 (EM6_3070) - 934799..937699 (-) 2901 WP_232037145.1 transcriptional regulator -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18481.35 Da        Isoelectric Point: 5.3111

>NTDB_id=71601 EM6_RS15465 WP_126424015.1 932993..933511(-) (ssb) [Asticcacaulis excentricus strain M6]
MAGSVNKVIIIGNLGKDPEIRTLNSGERVANLTVATSEQWRDKMTGERKEKTEWHRVVIFNDNLAKIAEQYLRKGSTVYL
EGSLQTRKWTDQQGVEKYTTEIVLQRFNGNLTLLGGRGDSGGGSSSSGGYDQGGGYGGGFDDGGYGAPASSGPKAQGSGP
KQNFDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=71601 EM6_RS15465 WP_126424015.1 932993..933511(-) (ssb) [Asticcacaulis excentricus strain M6]
ATGGCGGGCTCGGTCAACAAGGTCATCATTATCGGCAATCTGGGCAAGGACCCGGAAATCCGCACGCTCAATTCGGGGGA
GCGCGTCGCCAATCTGACGGTGGCCACTTCGGAACAGTGGCGCGACAAGATGACGGGCGAGCGCAAGGAAAAGACAGAGT
GGCACCGCGTCGTTATCTTCAATGACAACCTGGCCAAGATCGCCGAGCAGTACCTGCGCAAGGGCTCGACCGTCTATCTC
GAAGGTTCGCTGCAAACCCGCAAGTGGACCGATCAGCAGGGTGTCGAAAAGTACACCACCGAAATCGTGCTGCAACGCTT
CAACGGCAATCTGACGCTGCTGGGCGGCCGTGGCGACAGCGGCGGCGGGTCGTCCTCTTCGGGCGGCTATGATCAGGGCG
GCGGCTATGGCGGCGGTTTTGATGATGGCGGCTACGGGGCCCCGGCCTCTTCGGGCCCGAAGGCGCAAGGCTCCGGCCCC
AAGCAGAACTTCGATCTGGACGACGAAATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.457

100

0.529
  ssb Vibrio cholerae strain A1552

52.299

100

0.529
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.43
  ssb Neisseria meningitidis MC58

40.782

100

0.424

Multiple sequence alignment