Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   URS_RS15190 Genome accession   NZ_AP018824
Coordinates   3230979..3231512 (-) Length   177 a.a.
NCBI ID   WP_004988651.1    Uniprot ID   A0AA46P7Y1
Organism   Acinetobacter ursingii strain M3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3225979..3236512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  URS_RS15170 (URS_3137) tnpC 3227389..3228996 (-) 1608 WP_004985690.1 IS66 family transposase -
  URS_RS15175 (URS_3138) tnpB 3229071..3229406 (-) 336 WP_004985691.1 IS66 family insertion sequence element accessory protein TnpB -
  URS_RS15180 tnpA 3229403..3229831 (-) 429 WP_004985693.1 IS66-like element accessory protein TnpA -
  URS_RS17375 - 3230019..3230150 (-) 132 Protein_2948 IS3 family transposase -
  URS_RS15185 (URS_3139) pilE 3230530..3230985 (-) 456 WP_004988647.1 type IV pilin protein Machinery gene
  URS_RS15190 (URS_3140) comE 3230979..3231512 (-) 534 WP_004988651.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  URS_RS15195 (URS_3141) - 3231517..3235467 (-) 3951 WP_004988654.1 hypothetical protein -
  URS_RS15200 (URS_3142) - 3235484..3236230 (-) 747 WP_004988658.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19542.16 Da        Isoelectric Point: 9.2551

>NTDB_id=71592 URS_RS15190 WP_004988651.1 3230979..3231512(-) (comE) [Acinetobacter ursingii strain M3]
MKKETGKIRSHHGYGFTLIELMVTVAIVAIFAAIAFPSYQAYTRKAYAAQTQQEIEKLAEQLERHKARNFNYKGFDASFL
YKDASGVLISNFNNNKQELSLPVDGSSTKYILSIVDQTEGNPLLINSTSLGQGWAIKALSTDDKNDSFLKTSNGIQCKNK
TKANITFSGCGVGSEIW

Nucleotide


Download         Length: 534 bp        

>NTDB_id=71592 URS_RS15190 WP_004988651.1 3230979..3231512(-) (comE) [Acinetobacter ursingii strain M3]
ATGAAAAAAGAAACTGGGAAAATACGCTCTCACCACGGCTATGGTTTTACTTTAATTGAGCTGATGGTAACAGTTGCAAT
TGTCGCGATTTTTGCTGCAATTGCATTCCCAAGTTATCAAGCTTATACAAGAAAAGCTTATGCTGCACAGACTCAACAGG
AAATTGAAAAACTGGCTGAGCAATTAGAACGACACAAAGCCCGTAACTTTAATTATAAAGGCTTTGATGCAAGTTTTTTG
TATAAAGATGCAAGTGGTGTTTTAATTTCAAATTTTAATAACAATAAACAAGAGCTTAGTCTTCCAGTGGATGGCTCTTC
TACGAAATACATACTTTCTATTGTAGATCAAACGGAGGGGAATCCTCTGTTGATTAACTCAACATCTTTGGGGCAGGGCT
GGGCAATTAAGGCATTAAGCACTGATGATAAGAATGATAGTTTTTTAAAAACTAGCAACGGTATTCAATGTAAAAATAAA
ACCAAAGCAAATATCACTTTTTCGGGATGTGGTGTGGGGAGCGAGATATGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(37-114)

Prokaryotic N-terminal methylation motif (N_methyl)

(15-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

59.88

94.35

0.565
  pilY2 Acinetobacter baumannii D1279779

40.936

96.61

0.395

Multiple sequence alignment