Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   URS_RS15185 Genome accession   NZ_AP018824
Coordinates   3230530..3230985 (-) Length   151 a.a.
NCBI ID   WP_004988647.1    Uniprot ID   A0A3F3L6Q8
Organism   Acinetobacter ursingii strain M3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3227389..3229831 3230530..3230985 flank 699


Gene organization within MGE regions


Location: 3227389..3230985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  URS_RS15170 (URS_3137) tnpC 3227389..3228996 (-) 1608 WP_004985690.1 IS66 family transposase -
  URS_RS15175 (URS_3138) tnpB 3229071..3229406 (-) 336 WP_004985691.1 IS66 family insertion sequence element accessory protein TnpB -
  URS_RS15180 tnpA 3229403..3229831 (-) 429 WP_004985693.1 IS66-like element accessory protein TnpA -
  URS_RS17375 - 3230019..3230150 (-) 132 Protein_2948 IS3 family transposase -
  URS_RS15185 (URS_3139) pilE 3230530..3230985 (-) 456 WP_004988647.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16429.72 Da        Isoelectric Point: 8.4503

>NTDB_id=71591 URS_RS15185 WP_004988647.1 3230530..3230985(-) (pilE) [Acinetobacter ursingii strain M3]
MVAHHQFSIDRGFTLIELMVVVAIVAILVSIAYPNYQKYAQRTKRTDAQAEMLNIAKSMMQYKNSNSSFAGATVANVYGG
TVTPQQGTALYRLTFNPSPAIATGWTLVATPIENTSQDGDGIICLNDQGQKYWTKGATTCVLSAISTWDGR

Nucleotide


Download         Length: 456 bp        

>NTDB_id=71591 URS_RS15185 WP_004988647.1 3230530..3230985(-) (pilE) [Acinetobacter ursingii strain M3]
ATGGTAGCACATCATCAATTTTCAATAGATCGCGGGTTTACTTTAATCGAGCTCATGGTGGTGGTCGCTATAGTGGCCAT
CTTAGTGTCGATAGCTTATCCAAATTATCAAAAGTATGCACAACGTACTAAAAGGACAGATGCGCAGGCGGAAATGTTAA
ATATAGCTAAAAGCATGATGCAATATAAAAACAGCAATTCATCTTTTGCAGGAGCAACGGTTGCTAACGTATATGGCGGA
ACTGTCACACCTCAACAAGGGACTGCTTTATATCGTTTAACATTTAATCCTAGTCCTGCTATTGCAACAGGATGGACATT
AGTCGCTACGCCAATAGAGAATACGTCGCAGGATGGTGATGGAATCATTTGTCTCAATGACCAAGGTCAAAAATATTGGA
CCAAAGGTGCGACTACTTGTGTTCTTTCAGCTATCTCTACGTGGGACGGTCGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-124)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3L6Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

53.901

93.377

0.503
  comF Acinetobacter baylyi ADP1

48.252

94.702

0.457

Multiple sequence alignment