Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   URS_RS06600 Genome accession   NZ_AP018824
Coordinates   1367560..1368273 (+) Length   237 a.a.
NCBI ID   WP_044434144.1    Uniprot ID   A0AA46NMD2
Organism   Acinetobacter ursingii strain M3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1362560..1373273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  URS_RS06585 (URS_1349) ponA 1363139..1365703 (-) 2565 WP_104794746.1 penicillin-binding protein PBP1a -
  URS_RS06590 (URS_1350) pilM 1365867..1366925 (+) 1059 WP_104794745.1 pilus assembly protein PilM Machinery gene
  URS_RS06595 (URS_1351) pilN 1366925..1367563 (+) 639 WP_104794744.1 PilN domain-containing protein Machinery gene
  URS_RS06600 (URS_1352) pilO 1367560..1368273 (+) 714 WP_044434144.1 type 4a pilus biogenesis protein PilO Machinery gene
  URS_RS06605 (URS_1353) pilP 1368273..1368797 (+) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  URS_RS06610 (URS_1354) pilQ 1368860..1370989 (+) 2130 WP_171457979.1 type IV pilus secretin PilQ family protein Machinery gene
  URS_RS06615 (URS_1355) aroK 1371026..1371568 (+) 543 WP_004991750.1 shikimate kinase AroK -
  URS_RS06620 (URS_1356) aroB 1371600..1372682 (+) 1083 WP_126624235.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26663.43 Da        Isoelectric Point: 4.9910

>NTDB_id=71575 URS_RS06600 WP_044434144.1 1367560..1368273(+) (pilO) [Acinetobacter ursingii strain M3]
MSRDEFNELDPEVAAPKKKKLTLDKFLQQFNTLDMNNYGGWPLSVKITCWIFIFFAVCALGYFLAIKPKLDAISTAQAQE
QNLLNEFREKDSKLRNLQQYQVQLQEMESNFNQQLAQLPKETEIPSLVEDINMTGVNSGLKFKNIRLENEVKQEFFIEQP
ISIDATGDYHAFGAFVSAIAALPRIVTLHDFVIEGKQVKEKADIPEISYSVKAKTYRYIGADDQASGASAPVAAGAK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=71575 URS_RS06600 WP_044434144.1 1367560..1368273(+) (pilO) [Acinetobacter ursingii strain M3]
ATGAGTCGTGATGAATTCAATGAACTAGATCCTGAAGTTGCTGCACCAAAGAAAAAGAAATTGACCTTAGATAAATTTCT
TCAGCAGTTTAATACGCTGGATATGAATAACTACGGGGGATGGCCACTCTCAGTTAAGATTACTTGCTGGATTTTTATTT
TCTTCGCCGTCTGTGCTTTGGGCTATTTTTTAGCCATTAAGCCTAAACTGGATGCGATCTCAACAGCTCAGGCACAAGAG
CAGAATTTGCTCAACGAGTTTCGTGAAAAGGATTCAAAATTACGTAACTTGCAGCAATATCAGGTTCAATTGCAGGAAAT
GGAATCGAATTTTAACCAGCAACTGGCGCAACTTCCAAAAGAAACAGAAATTCCAAGTCTGGTTGAAGATATCAATATGA
CAGGGGTAAATTCTGGACTTAAATTTAAAAATATTCGTCTGGAAAATGAAGTTAAACAAGAATTCTTTATTGAGCAGCCG
ATCTCGATTGACGCGACTGGGGATTATCATGCCTTTGGTGCATTTGTGAGTGCTATTGCAGCACTACCACGTATTGTGAC
TTTGCATGATTTTGTCATTGAAGGAAAGCAGGTTAAAGAAAAAGCAGATATTCCTGAAATTAGTTATTCCGTGAAAGCAA
AAACCTATCGATATATAGGTGCGGATGATCAGGCGAGTGGTGCTTCTGCTCCAGTTGCAGCGGGGGCAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

75.949

100

0.759
  comO Acinetobacter baylyi ADP1

76.522

97.046

0.743

Multiple sequence alignment