Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilR   Type   Regulator
Locus tag   URS_RS03690 Genome accession   NZ_AP018824
Coordinates   752293..753723 (+) Length   476 a.a.
NCBI ID   WP_026039946.1    Uniprot ID   A0AA46S9Z2
Organism   Acinetobacter ursingii strain M3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 747293..758723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  URS_RS03670 (URS_0756) thrC 747531..748670 (+) 1140 WP_005001803.1 threonine synthase -
  URS_RS03675 (URS_0757) pbpG 748772..749833 (-) 1062 WP_119686664.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  URS_RS03680 (URS_0758) - 750048..750683 (+) 636 WP_004995355.1 response regulator -
  URS_RS03685 (URS_0759) pilS 750705..752273 (+) 1569 WP_010588809.1 ATP-binding protein Regulator
  URS_RS03690 (URS_0760) pilR 752293..753723 (+) 1431 WP_026039946.1 sigma-54 dependent transcriptional regulator Regulator
  URS_RS03695 (URS_0761) - 753741..754919 (-) 1179 WP_004995358.1 S41 family peptidase -
  URS_RS03700 (URS_0762) gpmI 754934..756484 (-) 1551 WP_010588812.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  URS_RS03705 (URS_0763) lptG 756616..757686 (-) 1071 WP_010588813.1 LPS export ABC transporter permease LptG -

Sequence


Protein


Download         Length: 476 a.a.        Molecular weight: 53692.58 Da        Isoelectric Point: 6.6692

>NTDB_id=71566 URS_RS03690 WP_026039946.1 752293..753723(+) (pilR) [Acinetobacter ursingii strain M3]
MVNKQPLVLLVDDEEDLCALMQMTLARMGIATHCAYRIAQAKELLQNNNYDACLTDLNLPDGNGLDLVHYVTQHWSHLPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQIHLEQLLQKAFNRPQKQVINDEDSLENRLLIGRSAPIQQLRTTLKKIARS
QAPVFVTGESGTGKEVIANLVHRLSNRSEGPFIAINCGAIPSELLESELFGHKKGSFSGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKVRPVGSEHEIDVDFRVISASHQDLETLVQQGKFRQDLFFRIHVMDLELPPLRERGQDILL
LAHHFIQKVCAEWEIPVKILSERAQTFLLEQYFPGNVRELRNMMERAITLSDDHQIDLPHLQTAPFRYSQATAPIQHHSD
YLSSANSNHSVPTTLANNKLPHEGLEQYLENVEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEEI

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=71566 URS_RS03690 WP_026039946.1 752293..753723(+) (pilR) [Acinetobacter ursingii strain M3]
ATAGTGAATAAACAACCGCTGGTTTTACTGGTTGATGATGAAGAAGATCTCTGTGCGTTAATGCAAATGACGCTAGCGCG
TATGGGGATAGCAACACATTGTGCTTATCGTATTGCGCAGGCGAAAGAACTTCTGCAAAACAATAATTATGATGCCTGTT
TGACTGATTTAAATCTGCCTGATGGCAATGGGCTAGATCTAGTGCATTATGTTACACAGCATTGGAGTCACTTGCCGATC
GCAGTATTAACCGCCTATGGCAACATGGATATTGCAATTGCAGCACTTAAAGCAGGTGCTTTTGATTTTGTCAGTAAACC
TGTCAACCAAATCCATTTAGAACAATTATTACAAAAAGCTTTTAATCGACCACAAAAACAGGTCATCAATGATGAAGATA
GTCTGGAAAACAGACTGCTCATTGGCCGTTCTGCACCGATCCAGCAACTACGCACCACTCTTAAGAAAATTGCACGCTCA
CAAGCACCCGTCTTTGTCACAGGAGAATCTGGCACAGGCAAGGAAGTGATCGCCAATCTGGTGCACCGTTTAAGTAATCG
CAGCGAAGGCCCATTTATTGCCATTAACTGTGGCGCAATTCCCAGTGAACTTTTAGAGAGTGAGCTATTTGGTCACAAAA
AAGGAAGTTTTAGCGGTGCAACTCAAGACAAACAAGGTCTGATCTTATCGGCACATGGCGGTAGTTTATTTCTGGATGAA
ATTGCTGAATTACCGTTGAATATGCAGGTTAAACTGTTACGGGCTGTACAAGAGAAAAAAGTTCGTCCAGTGGGTTCTGA
ACACGAAATTGATGTGGATTTCCGCGTGATTAGTGCCAGTCATCAGGATCTTGAAACATTGGTACAACAAGGCAAATTCC
GTCAGGATTTATTTTTCCGCATTCATGTGATGGACCTTGAACTCCCTCCATTACGTGAACGTGGACAGGACATTTTACTC
CTCGCCCATCATTTTATTCAAAAAGTGTGTGCTGAATGGGAAATTCCAGTCAAAATTCTGTCTGAACGCGCTCAGACTTT
TTTATTAGAACAATATTTCCCCGGTAATGTTCGTGAATTACGTAATATGATGGAACGTGCCATTACTTTAAGTGATGACC
ATCAAATTGATTTACCTCACTTACAAACCGCACCTTTTCGTTATAGCCAAGCAACGGCACCGATTCAACATCATTCTGAT
TATCTTTCTAGCGCAAATTCAAATCACTCAGTTCCTACGACATTGGCAAACAACAAACTGCCACACGAAGGGTTAGAACA
ATATTTAGAAAACGTTGAAAAAGAGATTCTCTTAAATGCACTCAATTTGACGCATTGGAATCGTACTTTGGCGGCCAAAA
AACTAGGCATGACTTTTCGATCTTTGCGCTATCGCCTGAAAAAATTTGGTTTAGATACTGAAGAGATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

76.987

100

0.773

  pilR Pseudomonas aeruginosa PAK

49.462

97.689

0.483


Multiple sequence alignment