Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PQP10_RS20305 Genome accession   NZ_CP116976
Coordinates   4197317..4197922 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CUVM53     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4192317..4202922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQP10_RS20275 (PQP10_20275) rsmS 4193022..4193183 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  PQP10_RS20280 (PQP10_20280) priC 4193197..4193724 (-) 528 WP_000844876.1 primosomal replication protein N'' -
  PQP10_RS20285 (PQP10_20285) ybaN 4193794..4194171 (+) 378 WP_001188905.1 DUF454 family protein -
  PQP10_RS20290 (PQP10_20290) apt 4194324..4194875 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PQP10_RS20295 (PQP10_20295) dnaX 4195004..4196935 (+) 1932 WP_272771794.1 DNA polymerase III subunit gamma/tau -
  PQP10_RS20300 (PQP10_20300) ybaB 4196988..4197317 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PQP10_RS20305 (PQP10_20305) recR 4197317..4197922 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PQP10_RS20310 (PQP10_20310) htpG 4198032..4199906 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  PQP10_RS20315 (PQP10_20315) adk 4200087..4200731 (+) 645 WP_001220233.1 adenylate kinase -
  PQP10_RS20320 (PQP10_20320) hemH 4200863..4201825 (+) 963 WP_001250088.1 ferrochelatase -
  PQP10_RS20325 (PQP10_20325) aes 4201822..4202781 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=715482 PQP10_RS20305 WP_001195025.1 4197317..4197922(+) (recR) [Escherichia coli strain CUVM53]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=715482 PQP10_RS20305 WP_001195025.1 4197317..4197922(+) (recR) [Escherichia coli strain CUVM53]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443