Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NQ495_RS07485 Genome accession   NZ_CP102250
Coordinates   1772976..1773443 (-) Length   155 a.a.
NCBI ID   WP_009133567.1    Uniprot ID   G5H7V8
Organism   Alistipes indistinctus YIT 12060     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1767976..1778443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ495_RS07470 (NQ495_07470) - 1768351..1769763 (+) 1413 WP_009133570.1 trehalase family glycosidase -
  NQ495_RS07475 (NQ495_07475) - 1769741..1772596 (-) 2856 WP_009133569.1 hypothetical protein -
  NQ495_RS07480 (NQ495_07480) - 1772599..1772946 (-) 348 WP_009133568.1 translation initiation factor -
  NQ495_RS07485 (NQ495_07485) ssb 1772976..1773443 (-) 468 WP_009133567.1 single-stranded DNA-binding protein Machinery gene
  NQ495_RS07490 (NQ495_07490) - 1773619..1774422 (-) 804 WP_009133566.1 purine-nucleoside phosphorylase -
  NQ495_RS07495 (NQ495_07495) lpxK 1774379..1775452 (-) 1074 WP_009133565.1 tetraacyldisaccharide 4'-kinase -
  NQ495_RS07500 (NQ495_07500) sppA 1775569..1777356 (-) 1788 WP_040294406.1 signal peptide peptidase SppA -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16934.75 Da        Isoelectric Point: 6.4829

>NTDB_id=715482 NQ495_RS07485 WP_009133567.1 1772976..1773443(-) (ssb) [Alistipes indistinctus YIT 12060]
MINKVILIGNVGADPEVRALEGGVKVARLRIATTERIYNRQTQETKEHTEWHNVTLWRNLADVADRFIRKGSQVYIEGSL
RTRDWTDKDGNKRYATEIVANDLKMLGRRGDAPASGADNSYGGSYGGAAQSSQSSPSPSGDIAASAPQEVDDLPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=715482 NQ495_RS07485 WP_009133567.1 1772976..1773443(-) (ssb) [Alistipes indistinctus YIT 12060]
ATGATCAACAAAGTGATTTTGATCGGCAATGTGGGAGCCGATCCCGAAGTGAGAGCGCTCGAAGGCGGTGTCAAGGTGGC
GCGCCTGCGGATCGCAACGACCGAGCGGATCTACAACCGCCAGACACAGGAAACCAAGGAGCATACCGAATGGCATAACG
TGACGCTGTGGCGTAACCTGGCCGACGTGGCCGACCGCTTTATCCGCAAGGGAAGCCAGGTCTATATCGAGGGAAGCCTC
CGCACGAGGGACTGGACGGACAAAGACGGCAATAAACGCTATGCGACCGAAATTGTCGCCAACGACCTGAAGATGCTCGG
GCGCCGCGGGGATGCACCTGCCTCGGGGGCGGACAACTCTTACGGAGGATCTTATGGCGGCGCAGCGCAATCTTCGCAGT
CCTCCCCTTCCCCGTCCGGCGATATTGCCGCATCGGCTCCGCAGGAAGTGGACGATCTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5H7V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.198

100

0.516
  ssb Neisseria gonorrhoeae MS11

43.949

100

0.445
  ssb Neisseria meningitidis MC58

43.312

100

0.439
  ssb Glaesserella parasuis strain SC1401

45.6

80.645

0.368