Detailed information NTG0715308

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY40_RS24720
• Genome accession: NZ_CP102179
• Coordinates: 5491652..5492998 (+)
• Length: 448 a.a.
• NCBI ID: WP_030140271.1
• Uniprot ID: -
• Organism: Pseudomonas alvandae strain B21-020
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5486652..5497998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY40_RS24695 (LOY40_24695)	pgeF	5486868..5487593 (-)	726	WP_258648297.1	peptidoglycan editing factor PgeF	-
LOY40_RS24700 (LOY40_24700)	rluD	5487590..5488552 (-)	963	WP_030140267.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY40_RS24705 (LOY40_24705)	-	5488704..5489720 (+)	1017	WP_030140268.1	outer membrane protein assembly factor BamD	-
LOY40_RS24710 (LOY40_24710)	-	5489843..5490076 (+)	234	WP_030140269.1	PP0621 family protein	-
LOY40_RS24715 (LOY40_24715)	pilS	5490066..5491655 (+)	1590	WP_258648298.1	nitrogen regulation protein NR(II)	Regulator
LOY40_RS24720 (LOY40_24720)	pilR	5491652..5492998 (+)	1347	WP_030140271.1	sigma-54 dependent transcriptional regulator	Regulator
LOY40_RS24725 (LOY40_24725)	-	5493394..5493531 (+)	138	WP_258648299.1	hypothetical protein	-
LOY40_RS24730 (LOY40_24730)	thiO	5493736..5494836 (-)	1101	WP_198798122.1	glycine oxidase ThiO	-
LOY40_RS24735 (LOY40_24735)	-	5494888..5495292 (-)	405	WP_258648300.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49976.40 Da
• Isoelectric Point: 6.3292

>NTDB_id=715308 LOY40_RS24720 WP_030140271.1 5491652..5492998(+) (pilR) [Pseudomonas alvandae strain B21-020]
MNTRSRQRILIVDDEPDIRELLEITLGRMKLDTRSAKNLSEAQSLLAAEAFDLCLTDMRLPDGTGLELVKHIQQRYSQLP
VAMITAYGSLEVAIDALKAGAFDFLTKPVDLARLRELVGSALRLSPGTTPGATVERVLLGDSPPMRGVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRASQPFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVMDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NYMLQRLAASTGNPAAKLHPAALDALRNYRFPGNVRELENMLERAYTLCEHHQIEADDLRLAESNVAGDVANPDLVRVDN
LEDYLEDVERKVILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=715308 LOY40_RS24720 WP_030140271.1 5491652..5492998(+) (pilR) [Pseudomonas alvandae strain B21-020]
TTGAATACACGCTCACGGCAACGAATCCTGATCGTCGATGACGAGCCGGACATCCGCGAACTCCTGGAAATCACCCTGGG
CAGGATGAAACTCGACACCCGCAGCGCCAAGAATCTCAGCGAGGCCCAATCCCTGCTGGCGGCCGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACGGGCCTGGAGCTGGTCAAACATATCCAGCAACGGTATTCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAGTCGCCATCGATGCCCTGAAGGCTGGCGCCTTCGATTTCCTGACCAA
GCCAGTCGATCTAGCTCGCCTGCGGGAATTGGTCGGCAGCGCCCTGCGCCTGTCACCGGGCACCACGCCCGGCGCGACCG
TCGAACGCGTTCTGTTGGGGGATTCGCCGCCGATGCGCGGCGTGCGCAAGCAAATCGAAAAACTGGCCCGAAGCCAGGCG
CCGGTCTATATCAGCGGCGAATCGGGCTGTGGCAAGGAATTGGTCGCCCGCCTGATCCATGAACAAGGGCCGCGCGCCAG
CCAGCCTTTCGTGCCGGTCAACTGCGGGGCAATTCCCACTGAACTGATGGAAAGCGAGTTTTTCGGCCACCGCAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCCGGGTTGTTCCAGGCCGCCCACGGCGGGACCCTGTTCCTCGACGAAGTGGCC
GACCTGCCGCTGGCGATGCAGGTCAAGCTCTTGCGCGCCATCCAGGAAAAAGCCGTGCGCGCCGTCGGCGGCCAGCAGGA
AGAAGTGATGGACGTGCGAATTCTCTGCGCCACTCACAAAGACCTCGACGCCGAAGTCGCGGCCGGGCGCTTTCGCCAGG
ATCTGTATTACCGACTGAACGTCATTGAACTGCGCGTCCCGCCCCTGCGCGAACGTCGTGAAGATATCGAGCCGCTGGCC
AACTACATGCTCCAGCGCCTGGCCGCGAGCACCGGTAACCCGGCGGCGAAGCTGCATCCTGCGGCACTCGATGCCCTGCG
CAATTACCGCTTCCCCGGCAACGTGCGGGAGCTGGAGAACATGCTGGAACGGGCCTATACCCTTTGCGAACACCATCAGA
TCGAGGCCGATGACCTGCGCCTTGCCGAGAGCAACGTGGCTGGCGATGTGGCTAACCCGGATCTGGTGCGGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAACGCAAGGTTATCCTCCAAGCGCTTGAAGAGACCCGCTGGAATCGCACGGCGGC
GGCACAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.604	99.107	0.779
pilR	Acinetobacter baumannii strain A118	49.673	100	0.509
luxO	Vibrio cholerae strain A1552	36.569	98.884	0.362