Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   NQZ91_RS07705 Genome accession   NZ_CP102145
Coordinates   1540069..1540977 (+) Length   302 a.a.
NCBI ID   WP_257117281.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535069..1545977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS07685 (NQZ91_07685) - 1536065..1537342 (+) 1278 WP_257117277.1 MerR family transcriptional regulator -
  NQZ91_RS07690 (NQZ91_07690) ruvB 1537595..1538593 (+) 999 WP_024388009.1 Holliday junction branch migration DNA helicase RuvB -
  NQZ91_RS07695 (NQZ91_07695) - 1538593..1539339 (+) 747 WP_257117278.1 GNAT family N-acetyltransferase -
  NQZ91_RS07700 (NQZ91_07700) - 1539341..1539949 (+) 609 WP_257117280.1 HAD-IA family hydrolase -
  NQZ91_RS07705 (NQZ91_07705) comR 1540069..1540977 (+) 909 WP_257117281.1 helix-turn-helix domain-containing protein Regulator
  NQZ91_RS07710 (NQZ91_07710) - 1541242..1542477 (+) 1236 WP_257117282.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NQZ91_RS07715 (NQZ91_07715) - 1542513..1542737 (+) 225 WP_125266400.1 hypothetical protein -
  NQZ91_RS07720 (NQZ91_07720) - 1542790..1544340 (+) 1551 WP_257104971.1 quinol oxidase -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 35766.70 Da        Isoelectric Point: 4.6185

>NTDB_id=714949 NQZ91_RS07705 WP_257117281.1 1540069..1540977(+) (comR) [Streptococcus suis strain DNS20]
MSDKEFGQRVRQLREQINLTREQFCGDEVELSVRQLIRIETGSSKPTLSKIQYIATRLGMTLYELMPDYVKLPDRYSKLK
FEVLRTPTYENTDLIEKRNRLMEEIYDDYYDDLPEEEQIAIDAFQSFVDIYETKSVHFGKAILDDYFEQVHRKDKFTVND
LLIVRLYLEHLQDEDRTSPRFQHFLDITQHFPVQVEAIDSNELFILRDVMLASIGILGTKECYDYIPPIFDTLDQIMVQT
HDFQKKPILNLLKWKYVLYTNSDREEAQKLYEEAVMFAKLIGDDHLVAKLEESWKGDSTGKV

Nucleotide


Download         Length: 909 bp        

>NTDB_id=714949 NQZ91_RS07705 WP_257117281.1 1540069..1540977(+) (comR) [Streptococcus suis strain DNS20]
ATGAGCGATAAGGAATTTGGGCAACGTGTTCGCCAGCTGAGAGAGCAGATTAATTTGACGCGCGAACAGTTTTGTGGTGA
TGAGGTTGAACTTTCAGTCCGGCAATTGATTCGGATTGAGACTGGTAGCTCAAAACCCACGTTGTCTAAAATCCAGTACA
TTGCCACACGTTTGGGAATGACCTTGTATGAATTGATGCCAGACTATGTTAAGCTCCCAGATAGATACTCGAAATTAAAG
TTTGAGGTTCTCCGCACACCGACCTATGAAAATACGGACTTGATAGAAAAACGCAATCGTCTGATGGAAGAAATTTATGA
CGACTATTACGACGACCTGCCAGAGGAAGAACAGATAGCAATTGATGCTTTTCAGTCTTTTGTTGACATATATGAAACAA
AGTCTGTCCATTTTGGGAAAGCTATCTTAGATGATTATTTCGAGCAGGTCCATCGTAAAGATAAATTTACTGTCAATGAT
TTATTGATTGTGCGGCTATATTTGGAGCATTTACAGGATGAGGACAGGACCTCGCCAAGATTTCAACATTTTTTAGATAT
TACCCAGCATTTTCCGGTACAGGTAGAAGCTATAGATTCAAATGAGCTATTTATTTTGCGTGATGTGATGCTAGCTTCTA
TTGGTATCCTTGGGACTAAGGAGTGTTATGACTATATTCCGCCTATTTTTGATACTCTAGACCAGATAATGGTCCAGACG
CACGATTTCCAAAAGAAACCGATTCTGAATCTATTAAAGTGGAAGTACGTACTATATACCAACAGTGACCGTGAAGAGGC
ACAAAAACTGTACGAAGAGGCCGTTATGTTTGCGAAATTAATAGGTGATGATCATTTGGTGGCTAAACTAGAAGAATCAT
GGAAAGGGGATTCCACTGGAAAAGTGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_19)

(7-68)

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

62.752

98.675

0.619
  comR Streptococcus suis 05ZYH33

62.752

98.675

0.619
  comR Streptococcus suis D9

55.96

100

0.56
  comR Streptococcus mutans UA159

42.282

98.675

0.417
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

39.236

95.364

0.374