Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   NQZ91_RS03450 Genome accession   NZ_CP102145
Coordinates   728330..730561 (-) Length   743 a.a.
NCBI ID   WP_257117867.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 723330..735561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS03430 (NQZ91_03430) - 723502..724392 (+) 891 WP_257117864.1 alpha/beta fold hydrolase -
  NQZ91_RS03435 (NQZ91_03435) phaC 724458..725528 (-) 1071 WP_105110511.1 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC -
  NQZ91_RS03440 (NQZ91_03440) - 725548..726834 (-) 1287 WP_257117865.1 poly(R)-hydroxyalkanoic acid synthase subunit PhaE -
  NQZ91_RS03445 (NQZ91_03445) - 727268..728224 (-) 957 WP_257117866.1 DNA/RNA non-specific endonuclease -
  NQZ91_RS03450 (NQZ91_03450) comEC/celB 728330..730561 (-) 2232 WP_257117867.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NQZ91_RS03455 (NQZ91_03455) - 730548..731216 (-) 669 WP_257117868.1 helix-hairpin-helix domain-containing protein -
  NQZ91_RS03460 (NQZ91_03460) - 731289..732035 (-) 747 WP_170242640.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  NQZ91_RS03465 (NQZ91_03465) tehB 732128..732988 (-) 861 WP_257118041.1 SAM-dependent methyltransferase TehB -
  NQZ91_RS03470 (NQZ91_03470) - 733140..734183 (+) 1044 WP_257117869.1 zinc-binding dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 83883.95 Da        Isoelectric Point: 7.8966

>NTDB_id=714933 NQZ91_RS03450 WP_257117867.1 728330..730561(-) (comEC/celB) [Streptococcus suis strain DNS20]
MSRFKLPCQPIHLAFLVVSLYFLVHRFSLLAIGLLSFLLVVFCLQQGQKALVRLLALLGLCGLFFGFQLYQWTRADQSAP
EQVTTLLVIPDTIDINGDSLSFRGRADGRVYQAFYKLTSQEEQEAFQNLSDLVDLTVETEVSRPAGQRNFNGFDYAAYLR
TQGIYRTVKVVAIHKVDKVVSWYPLDWLSSLRRKALVYVKTNFPAPMSHYMTGLLFGELDSDFDQMSELYSSLGIIHLFA
LSGMQVGFFVDKFRWILLRLGLTKETVDKVQIPFSLVYAGLTGWSVSVVRSLVQKILGNLGLRKLDNFAVTVFVCLLIMP
RFLLTAGGVLTFTYAFLLTVFDFEDLGWFKKIAVESLAISAGILPILIGYFYSFQPLSILLTFAFSFVFDVLLLPGLSLI
FLLSPLVKITWVNGFFVLLEKIIVWVADLGLRPWIFGKPSPLVLLVLLVGLFLLYDFHRRKKWLIGLSMVLALLFFMTKH
PLENEVTMVDVGQGDSLFLRDWRGRTVLIDVGGRVDFAAKEAWQERSRKANAEQTLIPYLHSRGVGRIDSLVLTHTDADH
VGDLLAVAKAVEIGTIYVSPGSVTDADFVEKLRAVNAPVRVVQVGDRLPIFDSHLEVLYPKLVGDGGNDDSIVLYGRLLQ
ANFLFTGDLEQSELELVETYPTLPVDVLKAGHHGSKGSSYPEFLDHIKAKIALVSAGENNRYKHPHQETLERFAHEKMHV
YRTDQQGAVRFRGWQQWRIETVK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=714933 NQZ91_RS03450 WP_257117867.1 728330..730561(-) (comEC/celB) [Streptococcus suis strain DNS20]
ATGTCACGGTTTAAGCTCCCCTGCCAGCCTATCCACCTGGCCTTTTTAGTCGTCTCCCTATATTTTTTGGTTCATCGCTT
TTCGCTTTTGGCAATAGGCCTGCTCAGTTTTCTCTTGGTGGTCTTCTGCTTGCAGCAGGGGCAGAAGGCTTTAGTCAGAC
TGCTGGCGCTTTTAGGCCTATGTGGTCTCTTCTTCGGATTTCAGTTGTATCAATGGACCAGGGCAGACCAGTCAGCCCCT
GAGCAAGTGACGACCCTACTGGTCATTCCAGATACCATTGACATCAATGGAGACAGCCTGTCCTTTCGCGGTCGGGCTGA
CGGGCGAGTTTACCAAGCCTTCTACAAATTGACCAGCCAAGAGGAGCAGGAGGCTTTTCAAAATCTGTCGGACCTGGTTG
ACCTGACGGTAGAGACTGAGGTGAGCCGGCCAGCCGGTCAGCGTAATTTCAATGGTTTTGATTATGCTGCCTATTTGCGG
ACCCAGGGCATTTATCGGACGGTCAAGGTTGTGGCTATTCATAAGGTTGACAAGGTTGTGAGCTGGTATCCTCTGGACTG
GCTATCTAGCCTGCGAAGAAAGGCTCTGGTCTATGTGAAAACCAATTTCCCTGCTCCCATGAGCCATTATATGACGGGGC
TTTTGTTTGGGGAGTTGGATAGCGATTTTGACCAGATGAGTGAGCTCTATTCCAGTCTGGGCATTATCCACCTCTTTGCC
CTGTCTGGTATGCAGGTTGGCTTTTTTGTGGACAAGTTTCGTTGGATTCTCCTGCGGCTGGGTCTGACCAAGGAGACGGT
GGACAAGGTTCAAATTCCCTTTTCACTTGTTTATGCTGGTCTGACAGGCTGGTCGGTTTCTGTCGTCCGGTCTTTAGTAC
AGAAAATTCTGGGCAATCTGGGGTTGCGGAAGTTGGATAACTTTGCGGTGACGGTCTTTGTTTGCCTGCTCATTATGCCA
CGCTTTTTGCTGACAGCAGGCGGTGTCCTGACCTTTACCTACGCTTTCTTGCTGACAGTTTTTGACTTCGAGGACTTGGG
CTGGTTTAAGAAAATTGCGGTGGAAAGTTTGGCTATTTCGGCTGGGATTTTACCTATTCTAATCGGCTATTTTTATTCTT
TCCAGCCCCTGTCCATTCTGCTGACCTTTGCTTTTTCCTTTGTATTCGATGTCTTGCTCCTACCAGGTCTGTCCTTGATT
TTCCTGCTATCGCCCTTGGTCAAAATTACTTGGGTCAATGGATTTTTTGTCCTCTTGGAGAAAATTATTGTCTGGGTGGC
GGATTTGGGGTTGCGTCCGTGGATTTTTGGCAAGCCATCACCTCTGGTCTTGCTGGTTTTGCTGGTCGGTCTTTTCTTGC
TCTATGATTTTCACAGGCGGAAAAAATGGCTGATTGGTCTCAGCATGGTCCTCGCTCTGCTATTTTTCATGACAAAACAT
CCCCTGGAAAACGAGGTGACCATGGTGGACGTGGGGCAGGGAGATAGCCTTTTCCTGCGGGATTGGCGGGGGCGGACGGT
GCTCATTGATGTGGGTGGGCGCGTGGATTTTGCAGCCAAGGAGGCCTGGCAGGAGCGGTCGCGCAAGGCCAATGCAGAGC
AGACCTTGATTCCTTACCTTCATAGTCGAGGTGTGGGCAGGATTGACAGTTTGGTCTTGACCCATACCGATGCAGACCAT
GTGGGCGACCTCTTGGCTGTAGCCAAGGCTGTGGAGATTGGAACTATCTATGTGTCGCCGGGAAGTGTGACCGATGCGGA
CTTTGTGGAGAAGTTGAGGGCGGTCAATGCGCCTGTCAGAGTGGTGCAGGTTGGAGATAGATTGCCGATTTTTGATTCTC
ATCTGGAGGTGCTTTATCCCAAGCTCGTAGGTGACGGTGGCAATGATGATTCTATCGTGCTTTACGGCAGGCTCTTGCAG
GCCAATTTCCTCTTTACGGGGGATTTGGAGCAGAGTGAGCTGGAGCTGGTGGAGACCTATCCCACTCTGCCGGTCGATGT
CTTAAAAGCGGGGCATCATGGGTCCAAAGGCTCCTCTTATCCTGAATTTTTGGACCATATCAAGGCCAAGATTGCCCTGG
TATCGGCTGGGGAAAATAACCGCTACAAGCACCCTCATCAAGAAACCTTGGAACGATTTGCACATGAAAAAATGCATGTT
TATCGGACGGACCAGCAGGGAGCAGTACGGTTTAGGGGCTGGCAGCAGTGGCGGATTGAAACGGTGAAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(491-697)

Domain of unknown function (DUF4131) (DUF4131)

(27-174)

Competence protein (Competence)

(214-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

54.263

99.462

0.54
  comEC/celB Streptococcus mitis NCTC 12261

53.495

100

0.536
  comEC/celB Streptococcus pneumoniae TIGR4

52.483

100

0.526
  comEC/celB Streptococcus pneumoniae Rx1

52.215

100

0.524
  comEC/celB Streptococcus pneumoniae D39

52.215

100

0.524
  comEC/celB Streptococcus pneumoniae R6

52.215

100

0.524
  comEC Lactococcus lactis subsp. cremoris KW2

47.984

100

0.48