Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   NQZ93_RS05610 Genome accession   NZ_CP102141
Coordinates   1154906..1156285 (-) Length   459 a.a.
NCBI ID   WP_024381361.1    Uniprot ID   A0A075SID2
Organism   Streptococcus suis strain DNR48     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context


Location: 1149906..1161285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ93_RS05590 (NQZ93_05590) - 1151165..1151755 (-) 591 WP_009909951.1 class I SAM-dependent methyltransferase -
  NQZ93_RS05595 (NQZ93_05595) coaA 1151864..1152784 (+) 921 WP_024381359.1 type I pantothenate kinase -
  NQZ93_RS05600 (NQZ93_05600) rpsT 1152843..1153091 (+) 249 WP_012027069.1 30S ribosomal protein S20 -
  NQZ93_RS05605 (NQZ93_05605) - 1153353..1154582 (-) 1230 WP_024381360.1 transglutaminase domain-containing protein -
  NQZ93_RS05610 (NQZ93_05610) ciaH 1154906..1156285 (-) 1380 WP_024381361.1 cell wall metabolism sensor histidine kinase WalK Regulator
  NQZ93_RS05615 (NQZ93_05615) ciaR 1156278..1156949 (-) 672 WP_009909965.1 response regulator transcription factor Regulator
  NQZ93_RS05620 (NQZ93_05620) - 1157143..1157298 (-) 156 WP_228380904.1 hypothetical protein -
  NQZ93_RS05625 (NQZ93_05625) - 1157356..1157490 (-) 135 WP_255304292.1 hypothetical protein -
  NQZ93_RS05630 (NQZ93_05630) phoU 1157656..1158312 (-) 657 WP_024390542.1 phosphate signaling complex protein PhoU -
  NQZ93_RS05635 (NQZ93_05635) pstB 1158341..1159099 (-) 759 WP_002937614.1 phosphate ABC transporter ATP-binding protein PstB -
  NQZ93_RS05640 (NQZ93_05640) pstB 1159111..1159914 (-) 804 WP_002940866.1 phosphate ABC transporter ATP-binding protein PstB -
  NQZ93_RS05645 (NQZ93_05645) pstA 1159939..1160826 (-) 888 WP_024381362.1 phosphate ABC transporter permease PstA -

Sequence


Protein


Download         Length: 459 a.a.        Molecular weight: 51961.70 Da        Isoelectric Point: 6.8882

>NTDB_id=714846 NQZ93_RS05610 WP_024381361.1 1154906..1156285(-) (ciaH) [Streptococcus suis strain DNR48]
MPKRFKKLMYTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMYQNSDNTLKRIKKEPALAVGFAIARTYEPNSVFILQD
SPTGEETTSSSSDSMPVPKNQKNTRAGDQLRLGANTHVLLYSKSGEMINPDTFTGLADLSLDKEKLGEIKETTVESSFGM
SEDYRYITIGLATDELGYYSSYDIKYATILVNVSQIKSSIESYEATVAIVMVSAWLISILASIYLSNLSMRPILISYQKQ
KDFVENASHELRTPLAVLQNRLESLFRHPETTILESSESIGSSLEEVRNMRLLTTNLLNLARRDDGLKVDMIDVQPNYFD
EIFANYLMIAEENGKTLTVNNLIHQPIRTDKVLIKQLLTILFDNAMKYTDEDGTIQIAANIKDKLVCFTVIDNGLGISDT
DKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIIKNLDGEISVRDNQPKGTIFEVRLPK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=714846 NQZ93_RS05610 WP_024381361.1 1154906..1156285(-) (ciaH) [Streptococcus suis strain DNR48]
ATGCCTAAGCGATTTAAAAAATTAATGTACACGGATAAATTTTCTTTCTTTATCCGTTATTTTGCAGTATTTACTCTGAT
TTTTGGTTTAATGACAGCCATCATTTTTCAATTAATGCGTTCAACTATGTACCAAAATTCAGATAACACCTTGAAACGCA
TTAAGAAAGAACCAGCGCTGGCTGTTGGTTTTGCAATCGCAAGAACCTATGAGCCCAATTCTGTATTTATCCTTCAAGAT
AGTCCAACTGGTGAAGAAACTACGAGCTCTAGTTCAGATAGCATGCCTGTTCCTAAAAATCAAAAAAATACTAGAGCTGG
AGATCAGCTGAGATTAGGTGCCAATACTCATGTTTTACTCTATAGTAAAAGTGGAGAGATGATTAATCCAGATACTTTTA
CTGGTTTGGCCGACCTATCATTAGACAAGGAAAAATTGGGTGAAATTAAGGAAACTACGGTTGAATCAAGTTTTGGTATG
TCTGAAGATTATCGCTATATAACGATTGGGCTGGCTACAGATGAACTAGGTTATTATTCGTCCTATGATATAAAATATGC
GACAATTTTGGTGAATGTCAGCCAAATTAAATCTTCCATTGAGAGCTATGAAGCGACAGTTGCTATTGTTATGGTATCAG
CTTGGTTGATTTCTATACTAGCAAGTATTTACCTATCGAATCTTAGCATGCGTCCAATCCTAATTAGTTATCAAAAACAA
AAAGACTTCGTTGAAAATGCTAGTCATGAGTTACGCACACCGTTGGCAGTTCTTCAAAATCGCCTGGAAAGTCTATTTCG
TCATCCCGAGACAACTATTTTGGAAAGTAGTGAAAGCATCGGATCTAGTTTAGAAGAAGTTCGAAATATGCGACTATTGA
CAACAAATTTACTTAATTTGGCTCGTCGTGATGATGGCTTAAAAGTCGATATGATCGATGTCCAACCCAACTATTTTGAT
GAAATCTTTGCTAATTACCTTATGATTGCCGAAGAAAATGGAAAAACTCTAACAGTTAATAATTTGATTCATCAGCCAAT
TCGAACAGACAAGGTTTTGATTAAACAGTTGCTCACCATTTTGTTTGACAACGCTATGAAGTATACCGATGAAGATGGGA
CAATTCAAATAGCAGCTAATATCAAGGACAAACTAGTTTGTTTTACAGTTATTGACAATGGTTTGGGAATCAGCGATACC
GATAAAAAGAAAATCTTTGATCGCTTTTACCGAGTTGACAAGGCTAGAACACGTCAAAAAGGTGGATTTGGTTTAGGTTT
ATCTTTAGCTCAACAAATTATTAAGAATTTAGATGGTGAGATTTCTGTGAGAGATAACCAACCGAAAGGAACTATTTTTG
AGGTACGTTTACCCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A075SID2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus pneumoniae Rx1

49.345

99.782

0.492

  ciaH Streptococcus pneumoniae D39

49.345

99.782

0.492

  ciaH Streptococcus pneumoniae R6

49.345

99.782

0.492

  ciaH Streptococcus pneumoniae TIGR4

49.345

99.782

0.492

  ciaH Streptococcus mutans UA159

49.231

99.129

0.488