Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MCREHEC_RS26315 Genome accession   NZ_AP018796
Coordinates   5113101..5113637 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain E2855     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5108101..5118637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCREHEC_RS26295 aphA 5108389..5109103 (+) 715 Protein_5088 acid phosphatase AphA -
  MCREHEC_RS26300 (E2855_05141) yjbQ 5109214..5109630 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MCREHEC_RS26305 (E2855_05142) yjbR 5109634..5109990 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  MCREHEC_RS26310 (E2855_05143) uvrA 5110025..5112847 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  MCREHEC_RS26315 (E2855_05144) ssb 5113101..5113637 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MCREHEC_RS26320 (E2855_05145) yjcB 5113736..5114017 (-) 282 WP_001341690.1 YjcB family protein -
  MCREHEC_RS26325 (E2855_05146) pdeC 5114447..5116033 (+) 1587 WP_000019527.1 c-di-GMP phosphodiesterase PdeC -
  MCREHEC_RS26330 (E2855_05147) soxS 5116036..5116359 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  MCREHEC_RS26335 (E2855_05148) soxR 5116445..5116909 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=71476 MCREHEC_RS26315 WP_000168305.1 5113101..5113637(+) (ssb) [Escherichia coli strain E2855]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=71476 MCREHEC_RS26315 WP_000168305.1 5113101..5113637(+) (ssb) [Escherichia coli strain E2855]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment