Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NQZ97_RS04355 Genome accession   NZ_CP102136
Coordinates   880319..881260 (+) Length   313 a.a.
NCBI ID   WP_256787618.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 875319..886260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS04345 (NQZ97_04345) - 877289..878038 (+) 750 WP_256787620.1 hypothetical protein -
  NQZ97_RS04350 (NQZ97_04350) metG 878248..880251 (+) 2004 WP_256787619.1 methionine--tRNA ligase -
  NQZ97_RS04355 (NQZ97_04355) coiA 880319..881260 (+) 942 WP_256787618.1 competence protein CoiA Machinery gene
  NQZ97_RS04360 (NQZ97_04360) pepF 881490..883292 (+) 1803 WP_074389756.1 oligoendopeptidase F Regulator
  NQZ97_RS04365 (NQZ97_04365) - 883294..883734 (+) 441 WP_012775191.1 hypothetical protein -
  NQZ97_RS04370 (NQZ97_04370) - 883750..884223 (+) 474 WP_256787617.1 DUF6630 family protein -
  NQZ97_RS04375 (NQZ97_04375) - 884338..885627 (-) 1290 WP_061512318.1 IS4 family transposase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36170.70 Da        Isoelectric Point: 7.6564

>NTDB_id=714634 NQZ97_RS04355 WP_256787618.1 880319..881260(+) (coiA) [Streptococcus suis strain M105052_S26]
MLVALDEDGQVFNVLENPAPQGSFSCPGCGGPVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKFFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=714634 NQZ97_RS04355 WP_256787618.1 880319..881260(+) (coiA) [Streptococcus suis strain M105052_S26]
ATGTTAGTAGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGCAGTTTTTCCTGTCC
AGGTTGTGGAGGACCGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCATTTTGCCCATGTCACCCTACGGGATTGCA
CATACTTTTCCGAGAATGAGTCAGCCCAGCACCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCTAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGTTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTACCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.564

99.681

0.524
  coiA Streptococcus pneumoniae TIGR4

50.641

99.681

0.505
  coiA Streptococcus pneumoniae Rx1

50.641

99.681

0.505
  coiA Streptococcus pneumoniae D39

50.641

99.681

0.505
  coiA Streptococcus pneumoniae R6

50.641

99.681

0.505
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.428