Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   NQZ98_RS08595 Genome accession   NZ_CP102135
Coordinates   1688776..1689420 (+) Length   214 a.a.
NCBI ID   WP_171997191.1    Uniprot ID   A0A9Q5BR78
Organism   Streptococcus suis strain M106471_S40     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683776..1694420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS08570 (NQZ98_08570) - 1684435..1685772 (-) 1338 WP_044762074.1 hemolysin family protein -
  NQZ98_RS08575 (NQZ98_08575) - 1685905..1686684 (+) 780 WP_024399664.1 ABC transporter ATP-binding protein -
  NQZ98_RS08580 (NQZ98_08580) - 1686700..1687254 (-) 555 WP_024396129.1 class I SAM-dependent methyltransferase -
  NQZ98_RS08585 (NQZ98_08585) - 1687264..1687782 (-) 519 WP_024399663.1 TetR/AcrR family transcriptional regulator -
  NQZ98_RS08590 (NQZ98_08590) - 1687904..1688722 (+) 819 WP_024399662.1 cation diffusion facilitator family transporter -
  NQZ98_RS08595 (NQZ98_08595) cclA/cilC 1688776..1689420 (+) 645 WP_171997191.1 A24 family peptidase Machinery gene
  NQZ98_RS08600 (NQZ98_08600) - 1689528..1690988 (+) 1461 WP_171997190.1 nicotinate phosphoribosyltransferase -
  NQZ98_RS08605 (NQZ98_08605) nadE 1691001..1691825 (+) 825 WP_044675081.1 ammonia-dependent NAD(+) synthetase -
  NQZ98_RS08610 (NQZ98_08610) trpB 1691867..1693042 (-) 1176 WP_024406670.1 tryptophan synthase subunit beta -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24158.23 Da        Isoelectric Point: 8.4760

>NTDB_id=714590 NQZ98_RS08595 WP_171997191.1 1688776..1689420(+) (cclA/cilC) [Streptococcus suis strain M106471_S40]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNTCKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEVLAG
LVVLLCHFQVLNLTETILSLAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQVSIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=714590 NQZ98_RS08595 WP_171997191.1 1688776..1689420(+) (cclA/cilC) [Streptococcus suis strain M106471_S40]
ATGAAAACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGTAATACCTGCAAGCGACGGCTCAAAGCCTGGGACCTCATTCCAATCCTGTCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAAGTCTTAGCTGGT
CTAGTCGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCAGCTTAGCAGGGCTAGTTTTAACCAT
TTACGACATCAAGCATCAGGAATATCCTTTTGCTGTCTGGCTCGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAGTCAGTATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.057

99.065

0.486
  cclA/cilC Streptococcus pneumoniae Rx1

47.642

99.065

0.472
  cclA/cilC Streptococcus pneumoniae D39

47.642

99.065

0.472
  cclA/cilC Streptococcus pneumoniae R6

47.642

99.065

0.472
  cclA/cilC Streptococcus pneumoniae TIGR4

46.698

99.065

0.463
  cclA/cilC Streptococcus mitis NCTC 12261

45.283

99.065

0.449