Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   NQZ98_RS02885 Genome accession   NZ_CP102135
Coordinates   540182..540847 (+) Length   221 a.a.
NCBI ID   WP_044772904.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535182..545847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS02855 (NQZ98_02855) - 535881..536093 (+) 213 WP_024415112.1 hypothetical protein -
  NQZ98_RS02860 (NQZ98_02860) - 536096..536440 (+) 345 WP_171997437.1 hypothetical protein -
  NQZ98_RS02865 (NQZ98_02865) - 536486..536977 (+) 492 WP_202859617.1 phage holin family protein -
  NQZ98_RS02870 (NQZ98_02870) - 537086..537922 (+) 837 WP_171997438.1 N-acetylmuramoyl-L-alanine amidase -
  NQZ98_RS02875 (NQZ98_02875) - 538208..538840 (-) 633 WP_024389592.1 YigZ family protein -
  NQZ98_RS02880 (NQZ98_02880) comFA/cflA 538897..540189 (+) 1293 WP_171997439.1 DEAD/DEAH box helicase Machinery gene
  NQZ98_RS02885 (NQZ98_02885) comFC/cflB 540182..540847 (+) 666 WP_044772904.1 ComF family protein Machinery gene
  NQZ98_RS02890 (NQZ98_02890) hpf 540924..541466 (+) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25766.57 Da        Isoelectric Point: 8.4541

>NTDB_id=714571 NQZ98_RS02885 WP_044772904.1 540182..540847(+) (comFC/cflB) [Streptococcus suis strain M106471_S40]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLSSTNIPYQSLLGKYESQKQS
SKNRAERLETKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=714571 NQZ98_RS02885 WP_044772904.1 540182..540847(+) (comFC/cflB) [Streptococcus suis strain M106471_S40]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTTCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAACAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484