Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NQU90_RS02320 Genome accession   NZ_CP102108
Coordinates   486764..487351 (-) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain GD21SC2322TT     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 481764..492351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU90_RS02300 (NQU90_02300) - 482549..483055 (-) 507 WP_257124242.1 DUF1643 domain-containing protein -
  NQU90_RS02305 (NQU90_02305) - 483052..484326 (-) 1275 WP_257124243.1 restriction endonuclease subunit S -
  NQU90_RS02310 (NQU90_02310) - 484363..485370 (-) 1008 WP_257124244.1 hypothetical protein -
  NQU90_RS02315 (NQU90_02315) - 485357..486604 (-) 1248 WP_010635909.1 site-specific integrase -
  NQU90_RS02320 (NQU90_02320) ssb 486764..487351 (-) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  NQU90_RS02325 (NQU90_02325) uvrA 487722..490550 (+) 2829 WP_257124245.1 excinuclease ABC subunit UvrA -
  NQU90_RS02330 (NQU90_02330) - 490672..492345 (+) 1674 WP_257124246.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=714450 NQU90_RS02320 WP_005340181.1 486764..487351(-) (ssb) [Aeromonas veronii strain GD21SC2322TT]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=714450 NQU90_RS02320 WP_005340181.1 486764..487351(-) (ssb) [Aeromonas veronii strain GD21SC2322TT]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAACTGGCCGAAGTGGCTGGCGAATACCTGAAAAAAGGCTCCCAGGTCTATGTC
GAAGGCAAACTGCAGACTCGCAAATGGCAAGATCAGAGTGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACCGGTGTCATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGCCAGGGCATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAACAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456