Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   NP165_RS05310 Genome accession   NZ_CP102096
Coordinates   1100011..1100598 (+) Length   195 a.a.
NCBI ID   WP_257085546.1    Uniprot ID   -
Organism   Vibrio japonicus strain JCM 31412     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1095011..1105598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS05290 (NP165_05290) panP 1095402..1097048 (-) 1647 WP_257085270.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  NP165_RS05295 (NP165_05295) - 1097193..1097705 (-) 513 WP_257085271.1 hypothetical protein -
  NP165_RS05300 (NP165_05300) - 1097818..1098723 (-) 906 WP_257085272.1 lysine exporter LysO family protein -
  NP165_RS05305 (NP165_05305) - 1098737..1099657 (-) 921 WP_257085273.1 HDOD domain-containing protein -
  NP165_RS05310 (NP165_05310) tfoX 1100011..1100598 (+) 588 WP_257085546.1 TfoX/Sxy family DNA transformation protein Regulator
  NP165_RS05315 (NP165_05315) - 1100757..1101308 (-) 552 WP_257085274.1 hypothetical protein -
  NP165_RS05320 (NP165_05320) - 1101473..1101970 (-) 498 WP_257085275.1 response regulator -
  NP165_RS05325 (NP165_05325) - 1101988..1103916 (-) 1929 WP_257085276.1 ATP-binding protein -
  NP165_RS05330 (NP165_05330) - 1104089..1105348 (+) 1260 WP_257085277.1 YdgA family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22411.85 Da        Isoelectric Point: 8.4511

>NTDB_id=714348 NP165_RS05310 WP_257085546.1 1100011..1100598(+) (tfoX) [Vibrio japonicus strain JCM 31412]
MDMIEHVFIKYVSKFGTFQKRSMFGGTGLFQDEAMFALLSANKIFIRGGDQLDKELTALGCEKYRHVKKQTTATVNYYDI
TEIFEADSARLDELLQQSIDFSVSERKFKRSAANRRLRDLPNMQLTLERMVKKAGIEDVDTFLELGAPAVFTKVKEAYGN
DVDIKLLWKFAGAVDGIHWKLIQEPRKRQLLESCQ

Nucleotide


Download         Length: 588 bp        

>NTDB_id=714348 NP165_RS05310 WP_257085546.1 1100011..1100598(+) (tfoX) [Vibrio japonicus strain JCM 31412]
ATAGATATGATAGAGCACGTATTTATAAAATATGTAAGTAAGTTTGGTACATTCCAAAAACGTTCTATGTTTGGTGGTAC
AGGGCTGTTTCAAGATGAAGCTATGTTCGCTCTATTAAGTGCGAATAAAATTTTTATCCGAGGCGGAGACCAGTTGGATA
AAGAGTTAACAGCGCTAGGATGCGAGAAATATCGCCACGTAAAAAAACAAACTACAGCGACGGTTAACTACTACGATATT
ACGGAAATTTTTGAGGCAGACAGTGCTCGCTTAGATGAGTTGTTACAGCAATCTATCGATTTTTCTGTGTCTGAGCGTAA
ATTTAAGCGTTCGGCAGCCAACCGTAGGCTACGCGATTTACCCAATATGCAACTCACTTTAGAGCGTATGGTGAAAAAGG
CTGGCATAGAAGATGTGGATACGTTTCTTGAGTTGGGCGCACCAGCAGTGTTTACCAAGGTTAAGGAAGCGTATGGTAAC
GATGTTGACATAAAGCTACTTTGGAAATTTGCAGGGGCAGTCGATGGCATCCATTGGAAGTTAATTCAGGAGCCACGCAA
GCGCCAGTTGCTAGAAAGCTGTCAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

72.539

98.974

0.718
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

72.539

98.974

0.718
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

72.539

98.974

0.718
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

72.539

98.974

0.718
  tfoX Vibrio cholerae strain A1552

72.539

98.974

0.718
  tfoX Vibrio campbellii strain DS40M4

69.744

100

0.697
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.205

100

0.682
  tfoX Aliivibrio fischeri ES114

57.216

99.487

0.569