Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   NQZ84_RS07940 Genome accession   NZ_CP102094
Coordinates   1627539..1628183 (+) Length   214 a.a.
NCBI ID   WP_257047840.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1622539..1633183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS07915 (NQZ84_07915) - 1623209..1624546 (-) 1338 WP_002942867.1 hemolysin family protein -
  NQZ84_RS07920 (NQZ84_07920) - 1624679..1625458 (+) 780 WP_044681113.1 ABC transporter ATP-binding protein -
  NQZ84_RS07925 (NQZ84_07925) - 1625474..1626028 (-) 555 WP_002942863.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  NQZ84_RS07930 (NQZ84_07930) - 1626038..1626556 (-) 519 WP_024396128.1 TetR/AcrR family transcriptional regulator -
  NQZ84_RS07935 (NQZ84_07935) - 1626678..1627496 (+) 819 WP_044681038.1 cation diffusion facilitator family transporter -
  NQZ84_RS07940 (NQZ84_07940) cclA/cilC 1627539..1628183 (+) 645 WP_257047840.1 prepilin peptidase Machinery gene
  NQZ84_RS07945 (NQZ84_07945) - 1628291..1629751 (+) 1461 WP_044753699.1 nicotinate phosphoribosyltransferase -
  NQZ84_RS07950 (NQZ84_07950) nadE 1629764..1630588 (+) 825 WP_044753702.1 ammonia-dependent NAD(+) synthetase -
  NQZ84_RS07955 (NQZ84_07955) trpB 1630630..1631805 (-) 1176 WP_024393839.1 tryptophan synthase subunit beta -
  NQZ84_RS07960 (NQZ84_07960) - 1632626..1633153 (-) 528 WP_002942846.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24227.39 Da        Isoelectric Point: 8.4760

>NTDB_id=714313 NQZ84_RS07940 WP_257047840.1 1627539..1628183(+) (cclA/cilC) [Streptococcus suis strain 12RC1]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFIALILSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=714313 NQZ84_RS07940 WP_257047840.1 1627539..1628183(+) (cclA/cilC) [Streptococcus suis strain 12RC1]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACTTAATTCCCATCCTGTCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTTGTTTTTACTTTTATTGCTCTGATACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCGCCATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50

99.065

0.495
  cclA/cilC Streptococcus pneumoniae Rx1

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae D39

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae R6

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae TIGR4

48.544

96.262

0.467
  cclA/cilC Streptococcus mitis NCTC 12261

46.226

99.065

0.458