Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   NQZ84_RS03515 Genome accession   NZ_CP102094
Coordinates   708090..710327 (+) Length   745 a.a.
NCBI ID   WP_257048041.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 703090..715327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS03490 (NQZ84_03490) - 703161..704090 (-) 930 WP_024382739.1 ABC transporter substrate-binding protein -
  NQZ84_RS03495 (NQZ84_03495) - 704103..704888 (-) 786 WP_257048046.1 ABC transporter ATP-binding protein -
  NQZ84_RS03500 (NQZ84_03500) - 705040..706485 (-) 1446 WP_044768732.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  NQZ84_RS03505 (NQZ84_03505) - 706631..707377 (+) 747 WP_014735985.1 lysophospholipid acyltransferase family protein -
  NQZ84_RS03510 (NQZ84_03510) - 707444..708106 (+) 663 WP_044768730.1 helix-hairpin-helix domain-containing protein -
  NQZ84_RS03515 (NQZ84_03515) comEC/celB 708090..710327 (+) 2238 WP_257048041.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 84092.96 Da        Isoelectric Point: 6.7118

>NTDB_id=714294 NQZ84_RS03515 WP_257048041.1 708090..710327(+) (comEC/celB) [Streptococcus suis strain 12RC1]
MSRLSKLPCQPIHLAVLAVAAYFAVHSFSLLTMGLLSLLLVVFGFRQGKAVFIKTLPLLALCGLFFGCQKVQWERADQSA
PEQVTTVQVIPDTIDINGDSLSFRGRADGQIYQFFYKLASQEEQAYFQELTDLVQLEVEAEVSLPAGQRNFKGFDYQTYL
KTQGIYRTVKLTAIKKIVPVQSWNVFDWLSIWRRQALVHVKTNFPAPMSHYMTGLLFGELDSDFDQMSDLYSSLGIIHLF
ALSGMQVGFFIDKFRWILLRLGLTKETVDKLQIPFSLFYAGLTGFSVSVVRSLVQKILGNLGLRKLDNFAVTVFVCLLIL
PRFLLTAGGVLTFTYAFLLTVFDFEDLGQVKKAAVESLSISLGILPVLMTYFFAFQPLSILLTFVFSFVFDVLLLPGLSV
IFLLSPIIKITWVNGFFVFMEKIIVWVADLGFRPWILGKPSELFLLLLLVSLFLLYDFHRRKKWLLGLSLVLALLFFITK
HPLENEVTVLDIGQGDSIFLRDMRGRTVLIDVGGRVDFAAKEAWQERSSQANAERTLIPYLHSRGVDRIDSLVLTHTDTD
HVGDVLEVAKQVQIGRIVVSPGSLTVPDFVATLKKINVPVHVVKVGDRLPIFDSYLEVLYPDGTGDGGNNDSIVLYGRLL
ETNFLFTGDLEQGELDLIETYSNLPVDVLKAGHHGSKGSSYPEFLDHIEAKIALVSAGENNCYKHPHQETLDRFDSRNIQ
VYRTDQQGAIRFRGWKEWRIETVRE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=714294 NQZ84_RS03515 WP_257048041.1 708090..710327(+) (comEC/celB) [Streptococcus suis strain 12RC1]
ATGTCACGGTTGAGTAAGCTCCCCTGCCAGCCCATTCACCTGGCAGTATTGGCGGTGGCGGCCTACTTTGCAGTCCACTC
TTTTTCCCTCTTGACAATGGGCCTGCTGAGTCTGTTACTAGTTGTCTTTGGATTTCGGCAAGGCAAGGCAGTTTTCATCA
AAACGCTGCCGCTTCTAGCCTTATGTGGTCTGTTTTTCGGATGCCAGAAGGTCCAATGGGAGCGGGCAGACCAGTCAGCC
CCAGAGCAAGTCACAACTGTGCAGGTCATTCCAGATACCATAGACATCAACGGGGACAGCCTGTCTTTTCGTGGTCGGGC
TGACGGACAAATCTATCAGTTTTTCTACAAATTAGCCAGTCAGGAGGAGCAGGCTTATTTTCAAGAGCTGACTGATCTGG
TCCAGCTAGAAGTGGAAGCAGAGGTCAGCCTGCCAGCTGGTCAGCGGAATTTCAAGGGCTTTGACTATCAGACCTATCTG
AAAACACAGGGCATCTATCGGACTGTCAAGCTAACGGCGATTAAGAAGATTGTCCCTGTCCAGTCTTGGAATGTCTTTGA
CTGGCTATCAATCTGGCGGAGGCAGGCCTTGGTCCATGTAAAAACCAATTTTCCAGCTCCTATGAGCCACTACATGACAG
GGCTCTTGTTTGGGGAGCTGGATAGTGATTTTGACCAGATGAGTGACCTCTATTCCAGTCTGGGTATCATTCATCTCTTT
GCCCTGTCTGGTATGCAGGTGGGCTTTTTCATCGATAAGTTTCGCTGGATTTTACTGCGTTTGGGCTTGACCAAGGAAAC
CGTAGATAAGTTGCAGATTCCCTTTTCACTTTTCTATGCTGGTTTGACAGGTTTTTCTGTGTCGGTGGTGCGGTCTTTGG
TTCAGAAAATATTGGGTAATCTAGGCTTGCGGAAGTTGGATAATTTCGCGGTGACAGTCTTTGTCTGTCTGTTGATACTG
CCCCGATTTTTACTGACAGCTGGTGGTGTCTTGACCTTTACCTATGCTTTCTTGCTGACGGTTTTTGATTTTGAAGACTT
GGGGCAGGTCAAAAAGGCTGCGGTGGAAAGTCTCAGTATTTCGCTGGGAATTTTGCCGGTGCTGATGACCTATTTCTTTG
CCTTCCAGCCCCTGTCTATTCTCTTGACCTTTGTCTTTTCCTTTGTCTTTGATGTCCTGCTTTTGCCAGGCTTGTCGGTC
ATTTTTCTCTTATCACCAATTATCAAGATTACCTGGGTCAACGGATTTTTCGTTTTTATGGAGAAAATCATTGTCTGGGT
GGCGGATTTGGGCTTTCGGCCTTGGATACTGGGCAAGCCGTCTGAGCTGTTCCTCTTGCTTTTGCTGGTCAGCCTCTTCT
TGCTCTACGATTTCCACAGGAGAAAGAAATGGCTTCTAGGACTGAGCTTGGTCCTCGCTCTGCTATTTTTCATCACCAAA
CACCCGCTGGAAAATGAGGTGACGGTGCTGGACATCGGGCAGGGGGACAGCATCTTTTTGCGGGATATGCGGGGGCGGAC
GGTCTTGATTGATGTGGGCGGTCGGGTCGATTTTGCGGCCAAGGAAGCGTGGCAGGAGCGGTCTTCGCAGGCAAATGCAG
AGCGGACATTGATTCCCTATCTGCATAGTCGGGGCGTGGACAGGATTGATAGTTTGGTCCTGACCCATACCGATACAGAC
CATGTGGGCGATGTGCTGGAAGTGGCTAAGCAGGTGCAAATTGGTCGGATTGTCGTGTCGCCGGGAAGTCTGACGGTGCC
TGACTTTGTAGCGACCTTGAAAAAAATCAATGTTCCTGTCCATGTGGTAAAAGTGGGCGACCGCCTACCAATTTTTGACT
CCTATCTGGAGGTCCTCTATCCAGACGGGACAGGCGACGGTGGTAATAATGACTCCATTGTCCTTTATGGTCGCTTGTTG
GAAACTAATTTTCTCTTTACAGGGGACTTGGAGCAGGGGGAGTTGGACTTGATAGAAACCTATTCTAACTTGCCTGTTGA
TGTCCTCAAAGCCGGTCACCACGGATCTAAAGGTTCTTCCTATCCTGAATTTTTAGACCATATCGAAGCCAAGATTGCCT
TGGTATCTGCTGGAGAAAATAACTGCTACAAGCATCCTCATCAAGAAACCTTGGACCGCTTTGACAGTCGGAATATCCAA
GTCTATCGTACCGACCAGCAAGGAGCTATTCGCTTCCGAGGCTGGAAGGAGTGGAGGATTGAGACGGTGAGGGAGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(493-698)

Competence protein (Competence)

(215-461)

Domain of unknown function (DUF4131) (DUF4131)

(28-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

53.97

99.732

0.538
  comEC/celB Streptococcus mitis NCTC 12261

52.901

99.463

0.526
  comEC/celB Streptococcus pneumoniae TIGR4

51.887

99.597

0.517
  comEC/celB Streptococcus pneumoniae Rx1

51.752

99.597

0.515
  comEC/celB Streptococcus pneumoniae D39

51.752

99.597

0.515
  comEC/celB Streptococcus pneumoniae R6

51.752

99.597

0.515
  comEC Lactococcus lactis subsp. cremoris KW2

48.396

100

0.486