Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NF392_RS11705 Genome accession   NZ_CP102089
Coordinates   2427216..2427725 (-) Length   169 a.a.
NCBI ID   WP_023349922.1    Uniprot ID   A0A7X9WHU6
Organism   Staphylococcus capitis subsp. capitis strain H17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2422216..2432725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF392_RS11665 - 2423153..2423407 (-) 255 WP_002434433.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  NF392_RS11670 - 2423709..2423969 (+) 261 WP_002434577.1 hypothetical protein -
  NF392_RS11675 - 2423973..2424722 (-) 750 WP_023349917.1 amidohydrolase family protein -
  NF392_RS11680 - 2424879..2425136 (+) 258 WP_002434565.1 helix-turn-helix domain-containing protein -
  NF392_RS11685 - 2425207..2425560 (-) 354 WP_023349918.1 hypothetical protein -
  NF392_RS11690 - 2425644..2426207 (-) 564 WP_037560395.1 DUF5067 domain-containing protein -
  NF392_RS11695 - 2426344..2426598 (-) 255 WP_023349920.1 hypothetical protein -
  NF392_RS11700 rpsR 2426927..2427169 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  NF392_RS11705 ssbA 2427216..2427725 (-) 510 WP_023349922.1 single-stranded DNA-binding protein Machinery gene
  NF392_RS11710 rpsF 2427747..2428043 (-) 297 WP_002445146.1 30S ribosomal protein S6 -
  NF392_RS11715 - 2428176..2428322 (-) 147 Protein_2261 recombinase family protein -
  NF392_RS11720 - 2428456..2429202 (-) 747 WP_023349924.1 HAD family hydrolase -
  NF392_RS11725 - 2429206..2429622 (-) 417 WP_023349925.1 NUDIX domain-containing protein -
  NF392_RS11730 - 2429619..2430509 (-) 891 WP_023349926.1 DMT family transporter -
  NF392_RS11735 - 2430509..2430892 (-) 384 WP_037550912.1 NUDIX hydrolase -
  NF392_RS11740 - 2430905..2431582 (-) 678 WP_023349928.1 DUF7411 family protein -
  NF392_RS11745 - 2431586..2432725 (-) 1140 WP_226859625.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18672.18 Da        Isoelectric Point: 4.5778

>NTDB_id=714273 NF392_RS11705 WP_023349922.1 2427216..2427725(-) (ssbA) [Staphylococcus capitis subsp. capitis strain H17]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=714273 NF392_RS11705 WP_023349922.1 2427216..2427725(-) (ssbA) [Staphylococcus capitis subsp. capitis strain H17]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9WHU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.483

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

54.913

100

0.562
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361