Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NL417_RS21465 Genome accession   NZ_CP116916
Coordinates   4229593..4230129 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain MLI023K2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4224593..4235129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL417_RS21445 (NL417_021430) soxR 4226321..4226785 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  NL417_RS21450 (NL417_021435) soxS 4226871..4227194 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NL417_RS21455 (NL417_021440) pdeC 4227197..4228783 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  NL417_RS21460 (NL417_021445) yjcB 4229213..4229494 (+) 282 WP_001295689.1 YjcB family protein -
  NL417_RS21465 (NL417_021450) ssb 4229593..4230129 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NL417_RS21470 (NL417_021455) uvrA 4230384..4233206 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  NL417_RS21475 (NL417_021460) yjbR 4233241..4233597 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NL417_RS21480 (NL417_021465) yjbQ 4233601..4234017 (-) 417 WP_187770285.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NL417_RS21485 (NL417_021470) aphA 4234128..4234841 (-) 714 WP_001315956.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=714247 NL417_RS21465 WP_000168305.1 4229593..4230129(-) (ssb) [Escherichia coli strain MLI023K2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=714247 NL417_RS21465 WP_000168305.1 4229593..4230129(-) (ssb) [Escherichia coli strain MLI023K2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489