NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	NF398_RS11940	Genome accession	NZ_CP102087
Coordinates	2462102..2462611 (-)	Length	169 a.a.
NCBI ID	WP_023349922.1	Uniprot ID	A0A7X9WHU6
Organism	Staphylococcus capitis subsp. capitis strain K1-2-2-23
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2457102..2467611

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF398_RS11895	-	2457725..2457883 (-)	159	Protein_2298	patatin-like phospholipase family protein	-
NF398_RS11900	-	2458046..2458300 (-)	255	WP_002434433.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
NF398_RS11905	-	2458595..2458855 (+)	261	WP_002434577.1	hypothetical protein	-
NF398_RS11910	-	2458859..2459608 (-)	750	WP_023349917.1	amidohydrolase	-
NF398_RS11915	-	2459765..2460022 (+)	258	WP_002434565.1	helix-turn-helix transcriptional regulator	-
NF398_RS11920	-	2460093..2460446 (-)	354	WP_023349918.1	hypothetical protein	-
NF398_RS11925	-	2460530..2461102 (-)	573	WP_023349919.1	DUF5067 domain-containing protein	-
NF398_RS11930	-	2461230..2461484 (-)	255	WP_023349920.1	hypothetical protein	-
NF398_RS11935	rpsR	2461813..2462055 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
NF398_RS11940	ssbA	2462102..2462611 (-)	510	WP_023349922.1	single-stranded DNA-binding protein	Machinery gene
NF398_RS11945	rpsF	2462633..2462929 (-)	297	WP_002445146.1	30S ribosomal protein S6	-
NF398_RS11950	-	2463062..2463208 (-)	147	Protein_2309	recombinase family protein	-
NF398_RS11955	-	2463342..2464088 (-)	747	WP_023349924.1	HAD family hydrolase	-
NF398_RS11960	-	2464092..2464508 (-)	417	WP_023349925.1	NUDIX domain-containing protein	-
NF398_RS11965	-	2464505..2465395 (-)	891	WP_023349926.1	DMT family transporter	-
NF398_RS11970	-	2465395..2465778 (-)	384	WP_037550912.1	NUDIX domain-containing protein	-
NF398_RS11975	-	2465791..2466468 (-)	678	WP_023349928.1	hypothetical protein	-
NF398_RS11980	-	2466472..2467611 (-)	1140	WP_226859625.1	aminotransferase class V-fold PLP-dependent enzyme	-

Sequence

Protein

Download Length: 169 a.a. Molecular weight: 18672.18 Da Isoelectric Point: 4.5778

                                >NTDB_id=714238 NF398_RS11940 WP_023349922.1 2462102..2462611(-) (ssbA) [Staphylococcus capitis subsp. capitis strain K1-2-2-23]

MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR

SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI

DISDDDLPF

Nucleotide

Download Length: 510 bp

                                >NTDB_id=714238 NF398_RS11940 WP_023349922.1 2462102..2462611(-) (ssbA) [Staphylococcus capitis subsp. capitis strain K1-2-2-23]

ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC

GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT

TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT

AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA

TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC

AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC

GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7X9WHU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.483	100	0.669
ssb	Latilactobacillus sakei subsp. sakei 23K	54.913	100	0.562
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361

Detailed information NTG0714238