Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NQD60_RS00800 Genome accession   NZ_CP102085
Coordinates   198572..199081 (-) Length   169 a.a.
NCBI ID   WP_223693161.1    Uniprot ID   -
Organism   Mycoavidus sp. SF9855     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 193572..204081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD60_RS00775 (NQD60_00775) - 194203..195255 (-) 1053 WP_257100681.1 quinone-dependent dihydroorotate dehydrogenase -
  NQD60_RS00780 (NQD60_00780) - 195318..195863 (+) 546 WP_257100682.1 NUDIX hydrolase -
  NQD60_RS00785 (NQD60_00785) aat 195962..196690 (+) 729 WP_257100683.1 leucyl/phenylalanyl-tRNA--protein transferase -
  NQD60_RS00790 (NQD60_00790) - 196764..197849 (+) 1086 WP_257100684.1 AAA family ATPase -
  NQD60_RS00795 (NQD60_00795) - 197861..198522 (+) 662 Protein_152 DUF4276 family protein -
  NQD60_RS00800 (NQD60_00800) ssb 198572..199081 (-) 510 WP_223693161.1 single-stranded DNA-binding protein Machinery gene
  NQD60_RS00805 (NQD60_00805) - 199081..200277 (-) 1197 WP_257100685.1 MFS transporter -
  NQD60_RS00810 (NQD60_00810) uvrA 200395..203304 (+) 2910 WP_257100686.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18567.67 Da        Isoelectric Point: 5.7989

>NTDB_id=714174 NQD60_RS00800 WP_223693161.1 198572..199081(-) (ssb) [Mycoavidus sp. SF9855]
MASVNKVILVGNLGADPEIRALPNGDPVANIRLATTERYKDKASGEMRELTEWHRVVFFNRLAEVIRDYLKKGSSVYIEG
RIRTRKWQDQSGQDRYSTEIMGDQMQMLGGRSTGTVSMDQEGYGQGSAQPPARTSNFTPANAAANRPSSAPAHAPASSGF
DEMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=714174 NQD60_RS00800 WP_223693161.1 198572..199081(-) (ssb) [Mycoavidus sp. SF9855]
ATGGCATCCGTGAATAAAGTTATACTGGTTGGCAATCTTGGCGCCGATCCTGAAATCCGCGCTTTACCTAATGGCGATCC
GGTAGCCAATATTCGTCTGGCTACTACGGAACGTTACAAAGACAAAGCAAGTGGCGAAATGAGAGAACTGACTGAATGGC
ATCGCGTCGTTTTCTTTAACCGGCTAGCAGAGGTAATACGGGACTACCTTAAGAAGGGGTCATCCGTCTATATTGAAGGA
CGGATTCGCACTCGCAAATGGCAAGACCAAAGCGGGCAGGATCGCTATTCAACTGAAATCATGGGTGACCAAATGCAAAT
GCTCGGCGGGCGTAGCACTGGCACAGTTTCAATGGATCAAGAAGGCTACGGGCAAGGGTCCGCTCAACCCCCTGCGCGCA
CAAGCAATTTCACTCCTGCAAACGCAGCGGCAAACCGCCCTAGCAGTGCGCCCGCCCATGCGCCAGCAAGCAGTGGATTT
GATGAAATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.459

100

0.568
  ssb Vibrio cholerae strain A1552

51.667

100

0.55
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.473
  ssb Neisseria meningitidis MC58

44.571

100

0.462