Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NL406_RS21450 Genome accession   NZ_CP116913
Coordinates   4228816..4229352 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain MLI023K1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4223816..4234352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL406_RS21430 (NL406_021440) soxR 4225544..4226008 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  NL406_RS21435 (NL406_021445) soxS 4226094..4226417 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NL406_RS21440 (NL406_021450) pdeC 4226420..4228006 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  NL406_RS21445 (NL406_021455) yjcB 4228436..4228717 (+) 282 WP_001295689.1 YjcB family protein -
  NL406_RS21450 (NL406_021460) ssb 4228816..4229352 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NL406_RS21455 (NL406_021465) uvrA 4229607..4232429 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  NL406_RS21460 (NL406_021470) yjbR 4232464..4232820 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NL406_RS21465 (NL406_021475) yjbQ 4232824..4233240 (-) 417 WP_187770285.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NL406_RS21470 (NL406_021480) aphA 4233351..4234064 (-) 714 WP_001315956.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=714168 NL406_RS21450 WP_000168305.1 4228816..4229352(-) (ssb) [Escherichia coli strain MLI023K1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=714168 NL406_RS21450 WP_000168305.1 4228816..4229352(-) (ssb) [Escherichia coli strain MLI023K1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489