Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   PPM34_RS12910 Genome accession   NZ_CP116869
Coordinates   2499477..2500172 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2494477..2505172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS12885 minD 2495413..2496219 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  PPM34_RS12890 minC 2496221..2496901 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  PPM34_RS12895 mreD 2496954..2497472 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  PPM34_RS12900 mreC 2497469..2498341 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  PPM34_RS12905 mreB 2498372..2499385 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  PPM34_RS12910 ysxA/radC 2499477..2500172 (-) 696 WP_003246034.1 RadC family protein Machinery gene
  PPM34_RS12915 maf 2500209..2500778 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  PPM34_RS12920 spoIIB 2500931..2501929 (-) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  PPM34_RS12925 comC 2502063..2502809 (-) 747 WP_010886586.1 prepilin peptidase Machinery gene
  PPM34_RS12930 folC 2502949..2504241 (-) 1293 WP_003229640.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=713724 PPM34_RS12910 WP_003246034.1 2499477..2500172(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain MGP001]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=713724 PPM34_RS12910 WP_003246034.1 2499477..2500172(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain MGP001]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424