Detailed information NTG0713604

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: NPS17_RS09030
• Genome accession: NZ_CP101985
• Coordinates: 1901434..1901868 (-)
• Length: 144 a.a.
• NCBI ID: WP_002263440.1
• Uniprot ID: -
• Organism: Streptococcus mutans strain COCC33-14R
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1896434..1906868

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NPS17_RS09000 (NPS17_09000)	-	1896879..1897541 (-)	663	WP_002263446.1	type II CAAX endopeptidase family protein	-
NPS17_RS09005 (NPS17_09005)	-	1897594..1898034 (-)	441	WP_002263445.1	hypothetical protein	-
NPS17_RS09010 (NPS17_09010)	-	1898003..1898248 (-)	246	WP_002263444.1	helix-turn-helix transcriptional regulator	-
NPS17_RS09015 (NPS17_09015)	-	1898801..1900000 (-)	1200	WP_002265895.1	acetate kinase	-
NPS17_RS09020 (NPS17_09020)	comYH	1900059..1901012 (-)	954	WP_019317550.1	class I SAM-dependent methyltransferase	Machinery gene
NPS17_RS09025 (NPS17_09025)	comYG	1901067..1901456 (-)	390	WP_002263441.1	competence type IV pilus minor pilin ComGG	Machinery gene
NPS17_RS09030 (NPS17_09030)	comYF	1901434..1901868 (-)	435	WP_002263440.1	competence type IV pilus minor pilin ComGF	Machinery gene
NPS17_RS09035 (NPS17_09035)	comYE	1901855..1902148 (-)	294	WP_258968995.1	competence type IV pilus minor pilin ComGE	Machinery gene
NPS17_RS09040 (NPS17_09040)	comYD	1902120..1902524 (-)	405	WP_168742475.1	competence type IV pilus minor pilin ComGD	Machinery gene
NPS17_RS09045 (NPS17_09045)	comYC	1902511..1902825 (-)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
NPS17_RS09050 (NPS17_09050)	comYB	1902825..1903856 (-)	1032	WP_258969313.1	competence type IV pilus assembly protein ComGB	Machinery gene
NPS17_RS09055 (NPS17_09055)	comYA	1903792..1904733 (-)	942	WP_002263435.1	competence type IV pilus ATPase ComGA	Machinery gene
NPS17_RS09060 (NPS17_09060)	-	1904864..1905247 (-)	384	WP_002263434.1	DUF1033 family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16266.75 Da
• Isoelectric Point: 9.9512

>NTDB_id=713604 NPS17_RS09030 WP_002263440.1 1901434..1901868(-) (comYF) [Streptococcus mutans strain COCC33-14R]
MLKSKLKAFTLLECLLALLVIAGSVSVYNGLTKAISSNIHYLSKNQEDAWLLFCQQFRSELEGTTLQKLDSNKLYIQKNN
QSLAFGKSKASDFRKTNSDGRGYQPMLTEIKAANFSQSGKIIKLDLTFKDGLERTFVYAFHEKN

Nucleotide

• Length: 435 bp

>NTDB_id=713604 NPS17_RS09030 WP_002263440.1 1901434..1901868(-) (comYF) [Streptococcus mutans strain COCC33-14R]
TTGTTAAAAAGTAAATTGAAAGCTTTCACACTTTTAGAGTGTCTCCTTGCTTTGCTTGTCATTGCTGGTAGTGTATCTGT
TTATAATGGTCTAACTAAAGCTATTAGTAGTAATATTCATTACTTATCAAAAAATCAAGAAGATGCTTGGTTACTTTTTT
GTCAGCAATTTCGGTCTGAACTTGAAGGAACGACTTTGCAAAAATTGGATAGCAATAAGCTTTATATTCAAAAAAATAAT
CAAAGTTTAGCCTTTGGTAAATCAAAAGCAAGTGATTTTAGAAAGACTAACAGTGATGGACGTGGTTATCAGCCTATGTT
GACGGAGATCAAAGCTGCTAATTTTAGTCAATCAGGAAAAATTATTAAATTAGACCTTACTTTCAAAGATGGTTTAGAGA
GGACTTTTGTTTATGCTTTTCATGAAAAAAATTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (36-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA159	100	100	1
comYF	Streptococcus mutans UA140	99.306	100	0.993
comGF	Lactococcus lactis subsp. cremoris KW2	43.262	97.917	0.424
comGF/cglF	Streptococcus pneumoniae Rx1	40.299	93.056	0.375
comGF/cglF	Streptococcus pneumoniae D39	40.299	93.056	0.375
comGF/cglF	Streptococcus pneumoniae R6	40.299	93.056	0.375
comGF/cglF	Streptococcus pneumoniae TIGR4	40.299	93.056	0.375
comGF/cglF	Streptococcus mitis NCTC 12261	38.806	93.056	0.361