Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NP445_RS11365 Genome accession   NZ_CP101938
Coordinates   2209114..2209407 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain BDGP7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2204114..2214407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP445_RS11315 (NP445_11315) sinR 2204278..2204613 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  NP445_RS11320 (NP445_11320) tasA 2204681..2205481 (-) 801 WP_256688508.1 biofilm matrix protein TasA -
  NP445_RS11325 (NP445_11325) sipW 2205540..2206112 (-) 573 WP_017357979.1 signal peptidase I SipW -
  NP445_RS11330 (NP445_11330) tapA 2206162..2206689 (-) 528 WP_256688509.1 amyloid fiber anchoring/assembly protein TapA -
  NP445_RS11335 (NP445_11335) - 2206942..2207268 (+) 327 WP_045034370.1 DUF3889 domain-containing protein -
  NP445_RS11340 (NP445_11340) - 2207309..2207497 (-) 189 WP_256688510.1 YqzE family protein -
  NP445_RS11345 (NP445_11345) comGG 2207558..2207941 (-) 384 WP_178896851.1 competence type IV pilus minor pilin ComGG -
  NP445_RS11350 (NP445_11350) comGF 2207938..2208435 (-) 498 WP_034647459.1 competence type IV pilus minor pilin ComGF -
  NP445_RS11355 (NP445_11355) comGE 2208377..2208691 (-) 315 WP_039166034.1 competence type IV pilus minor pilin ComGE -
  NP445_RS11360 (NP445_11360) comGD 2208666..2209121 (-) 456 WP_256688511.1 competence type IV pilus minor pilin ComGD -
  NP445_RS11365 (NP445_11365) comGC 2209114..2209407 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  NP445_RS11370 (NP445_11370) comGB 2209424..2210464 (-) 1041 WP_041506954.1 competence type IV pilus assembly protein ComGB -
  NP445_RS11375 (NP445_11375) comGA 2210445..2211515 (-) 1071 WP_256688512.1 competence type IV pilus ATPase ComGA Machinery gene
  NP445_RS11380 (NP445_11380) - 2211974..2212846 (-) 873 WP_041506953.1 STAS domain-containing protein -
  NP445_RS11390 (NP445_11390) - 2213071..2213451 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NP445_RS11395 (NP445_11395) - 2213664..2213906 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=713398 NP445_RS11365 WP_008342186.1 2209114..2209407(-) (comGC) [Bacillus altitudinis strain BDGP7]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=713398 NP445_RS11365 WP_008342186.1 2209114..2209407(-) (comGC) [Bacillus altitudinis strain BDGP7]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACT
TGTCCGAATGGAAAAGCAATTTTCATTCAAAACGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392