Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NP445_RS11375 Genome accession   NZ_CP101938
Coordinates   2210445..2211515 (-) Length   356 a.a.
NCBI ID   WP_256688512.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BDGP7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2205445..2216515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP445_RS11325 (NP445_11325) sipW 2205540..2206112 (-) 573 WP_017357979.1 signal peptidase I SipW -
  NP445_RS11330 (NP445_11330) tapA 2206162..2206689 (-) 528 WP_256688509.1 amyloid fiber anchoring/assembly protein TapA -
  NP445_RS11335 (NP445_11335) - 2206942..2207268 (+) 327 WP_045034370.1 DUF3889 domain-containing protein -
  NP445_RS11340 (NP445_11340) - 2207309..2207497 (-) 189 WP_256688510.1 YqzE family protein -
  NP445_RS11345 (NP445_11345) comGG 2207558..2207941 (-) 384 WP_178896851.1 competence type IV pilus minor pilin ComGG -
  NP445_RS11350 (NP445_11350) comGF 2207938..2208435 (-) 498 WP_034647459.1 competence type IV pilus minor pilin ComGF -
  NP445_RS11355 (NP445_11355) comGE 2208377..2208691 (-) 315 WP_039166034.1 competence type IV pilus minor pilin ComGE -
  NP445_RS11360 (NP445_11360) comGD 2208666..2209121 (-) 456 WP_256688511.1 competence type IV pilus minor pilin ComGD -
  NP445_RS11365 (NP445_11365) comGC 2209114..2209407 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  NP445_RS11370 (NP445_11370) comGB 2209424..2210464 (-) 1041 WP_041506954.1 competence type IV pilus assembly protein ComGB -
  NP445_RS11375 (NP445_11375) comGA 2210445..2211515 (-) 1071 WP_256688512.1 competence type IV pilus ATPase ComGA Machinery gene
  NP445_RS11380 (NP445_11380) - 2211974..2212846 (-) 873 WP_041506953.1 STAS domain-containing protein -
  NP445_RS11390 (NP445_11390) - 2213071..2213451 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NP445_RS11395 (NP445_11395) - 2213664..2213906 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  NP445_RS11400 (NP445_11400) - 2213955..2214593 (-) 639 WP_256688514.1 MBL fold metallo-hydrolase -
  NP445_RS11405 (NP445_11405) - 2214754..2214927 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  NP445_RS11410 (NP445_11410) - 2214952..2215266 (-) 315 WP_256688515.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40396.75 Da        Isoelectric Point: 9.0449

>NTDB_id=713399 NP445_RS11375 WP_256688512.1 2210445..2211515(-) (comGA) [Bacillus altitudinis strain BDGP7]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRSQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=713399 NP445_RS11375 WP_256688512.1 2210445..2211515(-) (comGA) [Bacillus altitudinis strain BDGP7]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGATCATTGGCT
GTGATGCTAAGACGCAGTCAAGTGTTTGTTCGGCTCTCTACACTACCAACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACAGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGGAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACATTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACGATGAATGAACTCGAACAAACAATGGTTGC
TATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGGTTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.646