Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NP445_RS11315 Genome accession   NZ_CP101938
Coordinates   2204278..2204613 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BDGP7     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2199278..2209613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP445_RS11295 (NP445_11295) gcvT 2199754..2200851 (-) 1098 WP_256688507.1 glycine cleavage system aminomethyltransferase GcvT -
  NP445_RS11300 (NP445_11300) - 2201413..2203083 (+) 1671 WP_008342199.1 DEAD/DEAH box helicase -
  NP445_RS11305 (NP445_11305) - 2203098..2203895 (+) 798 WP_007501215.1 YqhG family protein -
  NP445_RS11310 (NP445_11310) - 2204080..2204244 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  NP445_RS11315 (NP445_11315) sinR 2204278..2204613 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  NP445_RS11320 (NP445_11320) tasA 2204681..2205481 (-) 801 WP_256688508.1 biofilm matrix protein TasA -
  NP445_RS11325 (NP445_11325) sipW 2205540..2206112 (-) 573 WP_017357979.1 signal peptidase I SipW -
  NP445_RS11330 (NP445_11330) tapA 2206162..2206689 (-) 528 WP_256688509.1 amyloid fiber anchoring/assembly protein TapA -
  NP445_RS11335 (NP445_11335) - 2206942..2207268 (+) 327 WP_045034370.1 DUF3889 domain-containing protein -
  NP445_RS11340 (NP445_11340) - 2207309..2207497 (-) 189 WP_256688510.1 YqzE family protein -
  NP445_RS11345 (NP445_11345) comGG 2207558..2207941 (-) 384 WP_178896851.1 competence type IV pilus minor pilin ComGG -
  NP445_RS11350 (NP445_11350) comGF 2207938..2208435 (-) 498 WP_034647459.1 competence type IV pilus minor pilin ComGF -
  NP445_RS11355 (NP445_11355) comGE 2208377..2208691 (-) 315 WP_039166034.1 competence type IV pilus minor pilin ComGE -
  NP445_RS11360 (NP445_11360) comGD 2208666..2209121 (-) 456 WP_256688511.1 competence type IV pilus minor pilin ComGD -
  NP445_RS11365 (NP445_11365) comGC 2209114..2209407 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=713397 NP445_RS11315 WP_017357978.1 2204278..2204613(+) (sinR) [Bacillus altitudinis strain BDGP7]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=713397 NP445_RS11315 WP_017357978.1 2204278..2204613(+) (sinR) [Bacillus altitudinis strain BDGP7]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928