Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NP434_RS20880 Genome accession   NZ_CP101936
Coordinates   4073439..4073957 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain BGSC 10A5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4068439..4078957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP434_RS20850 (NP434_20850) yyaJ 4068942..4070297 (+) 1356 WP_256683138.1 MFS transporter -
  NP434_RS20855 (NP434_20855) maa 4070331..4070885 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  NP434_RS20860 (NP434_20860) yyaH 4070903..4071283 (-) 381 WP_048654831.1 VOC family protein -
  NP434_RS20865 (NP434_20865) ccpB 4071339..4072274 (-) 936 WP_256683139.1 transcriptional regulator CcpB -
  NP434_RS20870 (NP434_20870) xth 4072334..4073092 (-) 759 WP_003226843.1 exodeoxyribonuclease III -
  NP434_RS20875 (NP434_20875) rpsR 4073156..4073395 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  NP434_RS20880 (NP434_20880) ssbA 4073439..4073957 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  NP434_RS20885 (NP434_20885) rpsF 4073998..4074285 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  NP434_RS20890 (NP434_20890) ychF 4074396..4075496 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  NP434_RS20895 (NP434_20895) yyaE 4075623..4077626 (-) 2004 WP_069323041.1 molybdopterin-dependent oxidoreductase -
  NP434_RS20900 (NP434_20900) yyzM 4077677..4077883 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=713276 NP434_RS20880 WP_003219228.1 4073439..4073957(-) (ssbA) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=713276 NP434_RS20880 WP_003219228.1 4073439..4073957(-) (ssbA) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378