Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   PNF29_RS13485 Genome accession   NZ_CP116773
Coordinates   2543036..2543611 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis strain SRCM125727     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2538036..2548611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS13465 (PNF29_13465) moeB 2538936..2539955 (-) 1020 WP_144453918.1 molybdopterin-synthase adenylyltransferase MoeB -
  PNF29_RS13470 (PNF29_13470) mobA 2540006..2540605 (-) 600 WP_144453920.1 molybdenum cofactor guanylyltransferase -
  PNF29_RS13475 (PNF29_13475) cse15 2540742..2541707 (+) 966 WP_144453922.1 spore protein Cse15 -
  PNF29_RS13480 (PNF29_13480) - 2541767..2542915 (-) 1149 Protein_2661 IS3 family transposase -
  PNF29_RS13485 (PNF29_13485) rok 2543036..2543611 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  PNF29_RS13490 (PNF29_13490) ykuV 2544077..2544523 (-) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  PNF29_RS13495 (PNF29_13495) ahpA 2544595..2545137 (-) 543 WP_017697282.1 biofilm-specific peroxidase AhpA -
  PNF29_RS13500 (PNF29_13500) mscT 2545374..2546177 (+) 804 WP_017697281.1 small-conductance mechanosensitive channel protein MscT -
  PNF29_RS13505 (PNF29_13505) ykuS 2546214..2546459 (-) 246 WP_003232382.1 YkuS family protein -
  PNF29_RS13510 (PNF29_13510) dapI 2546521..2547645 (-) 1125 WP_017697280.1 N-acetyldiaminopimelate deacetylase -
  PNF29_RS13515 (PNF29_13515) dapD 2547715..2548425 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=713042 PNF29_RS13485 WP_003232378.1 2543036..2543611(-) (rok) [Bacillus subtilis strain SRCM125727]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=713042 PNF29_RS13485 WP_003232378.1 2543036..2543611(-) (rok) [Bacillus subtilis strain SRCM125727]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1